miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28763 5' -50.3 NC_006146.1 + 130755 0.67 0.990861
Target:  5'- -cGGAGAagACGCCGCCCUguaccgCAAggaCAUCg -3'
miRNA:   3'- guUUUCUa-UGCGGCGGGG------GUUa--GUAG- -5'
28763 5' -50.3 NC_006146.1 + 123368 0.67 0.990861
Target:  5'- aGGAGGAccgagGCGgCGCCCCCGA-CAc- -3'
miRNA:   3'- gUUUUCUa----UGCgGCGGGGGUUaGUag -5'
28763 5' -50.3 NC_006146.1 + 74640 0.67 0.990861
Target:  5'- cCAAGAGAaaagAUGCaCGCCCCCc-UCAa- -3'
miRNA:   3'- -GUUUUCUa---UGCG-GCGGGGGuuAGUag -5'
28763 5' -50.3 NC_006146.1 + 21800 0.67 0.989551
Target:  5'- --cGGGAUgccggGCGCgCGCCCCCGuuGUUAUUc -3'
miRNA:   3'- guuUUCUA-----UGCG-GCGGGGGU--UAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 167649 0.67 0.989551
Target:  5'- ------cUGCGCCGUCCCCAGgccccUAUCc -3'
miRNA:   3'- guuuucuAUGCGGCGGGGGUUa----GUAG- -5'
28763 5' -50.3 NC_006146.1 + 74633 0.67 0.988697
Target:  5'- ----uGAUGCGgCGCCCCCuGuaguaggccacguacUCGUCg -3'
miRNA:   3'- guuuuCUAUGCgGCGGGGGuU---------------AGUAG- -5'
28763 5' -50.3 NC_006146.1 + 131232 0.67 0.988098
Target:  5'- cCAGGAGcc-CGCCGCCUCCAAggcCAa- -3'
miRNA:   3'- -GUUUUCuauGCGGCGGGGGUUa--GUag -5'
28763 5' -50.3 NC_006146.1 + 146796 0.67 0.988098
Target:  5'- ----cGGUGCcaGCCGCCCUCGAcccgCGUCc -3'
miRNA:   3'- guuuuCUAUG--CGGCGGGGGUUa---GUAG- -5'
28763 5' -50.3 NC_006146.1 + 167173 0.67 0.988098
Target:  5'- uGAAGGGccACGCgGCCCCCAGa---- -3'
miRNA:   3'- gUUUUCUa-UGCGgCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 29364 0.68 0.986494
Target:  5'- uGAGGGGUgagGCGCUGCUCCCAuuugCAa- -3'
miRNA:   3'- gUUUUCUA---UGCGGCGGGGGUua--GUag -5'
28763 5' -50.3 NC_006146.1 + 85210 0.68 0.984544
Target:  5'- aCGAGAGAcACGCCaGCCaaagagaaucaggCCCuuUCAUCc -3'
miRNA:   3'- -GUUUUCUaUGCGG-CGG-------------GGGuuAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 56167 0.68 0.978377
Target:  5'- gCAGAGGAUAgGCUGCguucugCCCCuggCAUCc -3'
miRNA:   3'- -GUUUUCUAUgCGGCG------GGGGuuaGUAG- -5'
28763 5' -50.3 NC_006146.1 + 900 0.68 0.978377
Target:  5'- gGGAAGGccgcGCGCCGCCCCCc------ -3'
miRNA:   3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5'
28763 5' -50.3 NC_006146.1 + 2764 0.68 0.978377
Target:  5'- gGGAAGGccgcGCGCCGCCCCCc------ -3'
miRNA:   3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5'
28763 5' -50.3 NC_006146.1 + 3696 0.68 0.978377
Target:  5'- gGGAAGGccgcGCGCCGCCCCCc------ -3'
miRNA:   3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5'
28763 5' -50.3 NC_006146.1 + 1832 0.68 0.978377
Target:  5'- gGGAAGGccgcGCGCCGCCCCCc------ -3'
miRNA:   3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5'
28763 5' -50.3 NC_006146.1 + 19064 0.68 0.978377
Target:  5'- aCGAGAGAUGUGCCGCCauuCCA-UCAg- -3'
miRNA:   3'- -GUUUUCUAUGCGGCGGg--GGUuAGUag -5'
28763 5' -50.3 NC_006146.1 + 111182 0.69 0.973172
Target:  5'- gCGAGAGAUGCGC--CCCCCGAcCAg- -3'
miRNA:   3'- -GUUUUCUAUGCGgcGGGGGUUaGUag -5'
28763 5' -50.3 NC_006146.1 + 111311 0.69 0.967116
Target:  5'- --cGGGggACGCCGCCCuCCAG--AUCg -3'
miRNA:   3'- guuUUCuaUGCGGCGGG-GGUUagUAG- -5'
28763 5' -50.3 NC_006146.1 + 159347 0.71 0.922423
Target:  5'- -----cGUGCGCCGCCUCCAG-CAUg -3'
miRNA:   3'- guuuucUAUGCGGCGGGGGUUaGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.