Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28763 | 5' | -50.3 | NC_006146.1 | + | 74633 | 0.67 | 0.988697 |
Target: 5'- ----uGAUGCGgCGCCCCCuGuaguaggccacguacUCGUCg -3' miRNA: 3'- guuuuCUAUGCgGCGGGGGuU---------------AGUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 74640 | 0.67 | 0.990861 |
Target: 5'- cCAAGAGAaaagAUGCaCGCCCCCc-UCAa- -3' miRNA: 3'- -GUUUUCUa---UGCG-GCGGGGGuuAGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 85210 | 0.68 | 0.984544 |
Target: 5'- aCGAGAGAcACGCCaGCCaaagagaaucaggCCCuuUCAUCc -3' miRNA: 3'- -GUUUUCUaUGCGG-CGG-------------GGGuuAGUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 86885 | 0.74 | 0.799867 |
Target: 5'- ---cAGGUA-GCCGCCUCCaAAUCAUCg -3' miRNA: 3'- guuuUCUAUgCGGCGGGGG-UUAGUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 97676 | 0.66 | 0.994031 |
Target: 5'- gGAAAuGUGCGCCcuGCUCUCGAUgAUCg -3' miRNA: 3'- gUUUUcUAUGCGG--CGGGGGUUAgUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 98440 | 0.66 | 0.996249 |
Target: 5'- cCAGAAccGGUuucgGCGCCGCCCgggggCCAGUC-UCu -3' miRNA: 3'- -GUUUU--CUA----UGCGGCGGG-----GGUUAGuAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 101253 | 0.67 | 0.992992 |
Target: 5'- uGGAGGAggACcgcgggcccauuaGCCGCCCCCAGUa--- -3' miRNA: 3'- gUUUUCUa-UG-------------CGGCGGGGGUUAguag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 103758 | 0.66 | 0.996249 |
Target: 5'- uCAGGAGcgGCcaGCgGCUCCCGGUCuUCc -3' miRNA: 3'- -GUUUUCuaUG--CGgCGGGGGUUAGuAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 104232 | 0.72 | 0.910425 |
Target: 5'- aGGGAGGUGCcCCGCCCCCc-UCAg- -3' miRNA: 3'- gUUUUCUAUGcGGCGGGGGuuAGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 107144 | 0.66 | 0.996817 |
Target: 5'- gCAGAuAGGcUACGUCGCCCaCCAGaaacaCGUCg -3' miRNA: 3'- -GUUU-UCU-AUGCGGCGGG-GGUUa----GUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 111081 | 0.66 | 0.997311 |
Target: 5'- aCAAAGGGUGC-CCGgUCCCGcgaCAUCu -3' miRNA: 3'- -GUUUUCUAUGcGGCgGGGGUua-GUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 111182 | 0.69 | 0.973172 |
Target: 5'- gCGAGAGAUGCGC--CCCCCGAcCAg- -3' miRNA: 3'- -GUUUUCUAUGCGgcGGGGGUUaGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 111311 | 0.69 | 0.967116 |
Target: 5'- --cGGGggACGCCGCCCuCCAG--AUCg -3' miRNA: 3'- guuUUCuaUGCGGCGGG-GGUUagUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 117203 | 0.66 | 0.994864 |
Target: 5'- aGAGAGGUGgcagucucaaacUGCUGCCCCCGggCuUCc -3' miRNA: 3'- gUUUUCUAU------------GCGGCGGGGGUuaGuAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 118561 | 0.72 | 0.910425 |
Target: 5'- cCAAAAGG-ACGCCGCCCCgGG-CAc- -3' miRNA: 3'- -GUUUUCUaUGCGGCGGGGgUUaGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 121410 | 0.66 | 0.99587 |
Target: 5'- cCGGGAGAgucUGCCcaugaccaacaucagGgCCCCGAUCAUCu -3' miRNA: 3'- -GUUUUCUau-GCGG---------------CgGGGGUUAGUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 121410 | 0.66 | 0.995601 |
Target: 5'- ---cAGAUgccACGCCGCCCCUGGcCGa- -3' miRNA: 3'- guuuUCUA---UGCGGCGGGGGUUaGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 122302 | 0.66 | 0.994031 |
Target: 5'- aCGucAGAUuuGCCaCCCCCA-UCGUCu -3' miRNA: 3'- -GUuuUCUAugCGGcGGGGGUuAGUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 123368 | 0.67 | 0.990861 |
Target: 5'- aGGAGGAccgagGCGgCGCCCCCGA-CAc- -3' miRNA: 3'- gUUUUCUa----UGCgGCGGGGGUUaGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 123811 | 0.66 | 0.997311 |
Target: 5'- --cGAGAcgGCGCaGCCCaCCGucuUCGUCa -3' miRNA: 3'- guuUUCUa-UGCGgCGGG-GGUu--AGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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