miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28763 5' -50.3 NC_006146.1 + 900 0.68 0.978377
Target:  5'- gGGAAGGccgcGCGCCGCCCCCc------ -3'
miRNA:   3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5'
28763 5' -50.3 NC_006146.1 + 1832 0.68 0.978377
Target:  5'- gGGAAGGccgcGCGCCGCCCCCc------ -3'
miRNA:   3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5'
28763 5' -50.3 NC_006146.1 + 2764 0.68 0.978377
Target:  5'- gGGAAGGccgcGCGCCGCCCCCc------ -3'
miRNA:   3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5'
28763 5' -50.3 NC_006146.1 + 3696 0.68 0.978377
Target:  5'- gGGAAGGccgcGCGCCGCCCCCc------ -3'
miRNA:   3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5'
28763 5' -50.3 NC_006146.1 + 12899 0.78 0.635583
Target:  5'- gGGGAGA-ACGCCGCCCuCCAGaacagcuUCAUCa -3'
miRNA:   3'- gUUUUCUaUGCGGCGGG-GGUU-------AGUAG- -5'
28763 5' -50.3 NC_006146.1 + 13361 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 16439 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 19064 0.68 0.978377
Target:  5'- aCGAGAGAUGUGCCGCCauuCCA-UCAg- -3'
miRNA:   3'- -GUUUUCUAUGCGGCGGg--GGUuAGUag -5'
28763 5' -50.3 NC_006146.1 + 19517 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 21800 0.67 0.989551
Target:  5'- --cGGGAUgccggGCGCgCGCCCCCGuuGUUAUUc -3'
miRNA:   3'- guuUUCUA-----UGCG-GCGGGGGU--UAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 22595 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 23728 0.71 0.916553
Target:  5'- gCGAAGGGgcgccggucUGCGCCGCCgCCgGGUCAa- -3'
miRNA:   3'- -GUUUUCU---------AUGCGGCGG-GGgUUAGUag -5'
28763 5' -50.3 NC_006146.1 + 25673 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 28751 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 29364 0.68 0.986494
Target:  5'- uGAGGGGUgagGCGCUGCUCCCAuuugCAa- -3'
miRNA:   3'- gUUUUCUA---UGCGGCGGGGGUua--GUag -5'
28763 5' -50.3 NC_006146.1 + 31558 0.75 0.761377
Target:  5'- -------gGCGCCGCCCCUAA-CAUCa -3'
miRNA:   3'- guuuucuaUGCGGCGGGGGUUaGUAG- -5'
28763 5' -50.3 NC_006146.1 + 40172 0.73 0.8525
Target:  5'- gGGAAGAgccCGCCGCCCUCc-UCGUCc -3'
miRNA:   3'- gUUUUCUau-GCGGCGGGGGuuAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 56167 0.68 0.978377
Target:  5'- gCAGAGGAUAgGCUGCguucugCCCCuggCAUCc -3'
miRNA:   3'- -GUUUUCUAUgCGGCG------GGGGuuaGUAG- -5'
28763 5' -50.3 NC_006146.1 + 64384 0.72 0.893303
Target:  5'- cCAGGGGAUGCGCCcaccugucugacuugGCCCCCGugcaCAUg -3'
miRNA:   3'- -GUUUUCUAUGCGG---------------CGGGGGUua--GUAg -5'
28763 5' -50.3 NC_006146.1 + 73799 0.78 0.604725
Target:  5'- ---uAGAgACGCUGCCCCUGAUUAUCg -3'
miRNA:   3'- guuuUCUaUGCGGCGGGGGUUAGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.