Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28763 | 5' | -50.3 | NC_006146.1 | + | 167649 | 0.67 | 0.989551 |
Target: 5'- ------cUGCGCCGUCCCCAGgccccUAUCc -3' miRNA: 3'- guuuucuAUGCGGCGGGGGUUa----GUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 167173 | 0.67 | 0.988098 |
Target: 5'- uGAAGGGccACGCgGCCCCCAGa---- -3' miRNA: 3'- gUUUUCUa-UGCGgCGGGGGUUaguag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 159347 | 0.71 | 0.922423 |
Target: 5'- -----cGUGCGCCGCCUCCAG-CAUg -3' miRNA: 3'- guuuucUAUGCGGCGGGGGUUaGUAg -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 149208 | 0.73 | 0.868402 |
Target: 5'- gCAGGAuGUugGCCGCCCCCug-CAg- -3' miRNA: 3'- -GUUUUcUAugCGGCGGGGGuuaGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 146796 | 0.67 | 0.988098 |
Target: 5'- ----cGGUGCcaGCCGCCCUCGAcccgCGUCc -3' miRNA: 3'- guuuuCUAUG--CGGCGGGGGUUa---GUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 138474 | 0.66 | 0.994031 |
Target: 5'- -uGGAGGUauccuaACGCCGCCCCUAuauUCc-- -3' miRNA: 3'- guUUUCUA------UGCGGCGGGGGUu--AGuag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 133934 | 1.1 | 0.009532 |
Target: 5'- uCAAAAGAUACGCCGCCCCCAAUCAUCu -3' miRNA: 3'- -GUUUUCUAUGCGGCGGGGGUUAGUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 131375 | 0.66 | 0.996249 |
Target: 5'- ------uUGCGCCGCcucCCCCAGccCAUCa -3' miRNA: 3'- guuuucuAUGCGGCG---GGGGUUa-GUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 131232 | 0.67 | 0.988098 |
Target: 5'- cCAGGAGcc-CGCCGCCUCCAAggcCAa- -3' miRNA: 3'- -GUUUUCuauGCGGCGGGGGUUa--GUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 130755 | 0.67 | 0.990861 |
Target: 5'- -cGGAGAagACGCCGCCCUguaccgCAAggaCAUCg -3' miRNA: 3'- guUUUCUa-UGCGGCGGGG------GUUa--GUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 125990 | 0.66 | 0.995532 |
Target: 5'- uCAAGAGAUugucccaGCGCCGgCCgCUCAAgguacCAUCg -3' miRNA: 3'- -GUUUUCUA-------UGCGGC-GG-GGGUUa----GUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 125727 | 0.75 | 0.790466 |
Target: 5'- gGAGGGGaGCGCCGCCgCCGAUCc-- -3' miRNA: 3'- gUUUUCUaUGCGGCGGgGGUUAGuag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 125151 | 0.74 | 0.818166 |
Target: 5'- gUAGGAGAggaGCUGCCCCCGGagcagCAUCa -3' miRNA: 3'- -GUUUUCUaugCGGCGGGGGUUa----GUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 123811 | 0.66 | 0.997311 |
Target: 5'- --cGAGAcgGCGCaGCCCaCCGucuUCGUCa -3' miRNA: 3'- guuUUCUa-UGCGgCGGG-GGUu--AGUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 123368 | 0.67 | 0.990861 |
Target: 5'- aGGAGGAccgagGCGgCGCCCCCGA-CAc- -3' miRNA: 3'- gUUUUCUa----UGCgGCGGGGGUUaGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 122302 | 0.66 | 0.994031 |
Target: 5'- aCGucAGAUuuGCCaCCCCCA-UCGUCu -3' miRNA: 3'- -GUuuUCUAugCGGcGGGGGUuAGUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 121410 | 0.66 | 0.995601 |
Target: 5'- ---cAGAUgccACGCCGCCCCUGGcCGa- -3' miRNA: 3'- guuuUCUA---UGCGGCGGGGGUUaGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 121410 | 0.66 | 0.99587 |
Target: 5'- cCGGGAGAgucUGCCcaugaccaacaucagGgCCCCGAUCAUCu -3' miRNA: 3'- -GUUUUCUau-GCGG---------------CgGGGGUUAGUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 118561 | 0.72 | 0.910425 |
Target: 5'- cCAAAAGG-ACGCCGCCCCgGG-CAc- -3' miRNA: 3'- -GUUUUCUaUGCGGCGGGGgUUaGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 117203 | 0.66 | 0.994864 |
Target: 5'- aGAGAGGUGgcagucucaaacUGCUGCCCCCGggCuUCc -3' miRNA: 3'- gUUUUCUAU------------GCGGCGGGGGUuaGuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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