miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28763 5' -50.3 NC_006146.1 + 133934 1.1 0.009532
Target:  5'- uCAAAAGAUACGCCGCCCCCAAUCAUCu -3'
miRNA:   3'- -GUUUUCUAUGCGGCGGGGGUUAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 73799 0.78 0.604725
Target:  5'- ---uAGAgACGCUGCCCCUGAUUAUCg -3'
miRNA:   3'- guuuUCUaUGCGGCGGGGGUUAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 12899 0.78 0.635583
Target:  5'- gGGGAGA-ACGCCGCCCuCCAGaacagcuUCAUCa -3'
miRNA:   3'- gUUUUCUaUGCGGCGGG-GGUU-------AGUAG- -5'
28763 5' -50.3 NC_006146.1 + 31558 0.75 0.761377
Target:  5'- -------gGCGCCGCCCCUAA-CAUCa -3'
miRNA:   3'- guuuucuaUGCGGCGGGGGUUaGUAG- -5'
28763 5' -50.3 NC_006146.1 + 125727 0.75 0.790466
Target:  5'- gGAGGGGaGCGCCGCCgCCGAUCc-- -3'
miRNA:   3'- gUUUUCUaUGCGGCGGgGGUUAGuag -5'
28763 5' -50.3 NC_006146.1 + 86885 0.74 0.799867
Target:  5'- ---cAGGUA-GCCGCCUCCaAAUCAUCg -3'
miRNA:   3'- guuuUCUAUgCGGCGGGGG-UUAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 125151 0.74 0.818166
Target:  5'- gUAGGAGAggaGCUGCCCCCGGagcagCAUCa -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUa----GUAG- -5'
28763 5' -50.3 NC_006146.1 + 40172 0.73 0.8525
Target:  5'- gGGAAGAgccCGCCGCCCUCc-UCGUCc -3'
miRNA:   3'- gUUUUCUau-GCGGCGGGGGuuAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 149208 0.73 0.868402
Target:  5'- gCAGGAuGUugGCCGCCCCCug-CAg- -3'
miRNA:   3'- -GUUUUcUAugCGGCGGGGGuuaGUag -5'
28763 5' -50.3 NC_006146.1 + 64384 0.72 0.893303
Target:  5'- cCAGGGGAUGCGCCcaccugucugacuugGCCCCCGugcaCAUg -3'
miRNA:   3'- -GUUUUCUAUGCGG---------------CGGGGGUua--GUAg -5'
28763 5' -50.3 NC_006146.1 + 104232 0.72 0.910425
Target:  5'- aGGGAGGUGCcCCGCCCCCc-UCAg- -3'
miRNA:   3'- gUUUUCUAUGcGGCGGGGGuuAGUag -5'
28763 5' -50.3 NC_006146.1 + 118561 0.72 0.910425
Target:  5'- cCAAAAGG-ACGCCGCCCCgGG-CAc- -3'
miRNA:   3'- -GUUUUCUaUGCGGCGGGGgUUaGUag -5'
28763 5' -50.3 NC_006146.1 + 23728 0.71 0.916553
Target:  5'- gCGAAGGGgcgccggucUGCGCCGCCgCCgGGUCAa- -3'
miRNA:   3'- -GUUUUCU---------AUGCGGCGG-GGgUUAGUag -5'
28763 5' -50.3 NC_006146.1 + 159347 0.71 0.922423
Target:  5'- -----cGUGCGCCGCCUCCAG-CAUg -3'
miRNA:   3'- guuuucUAUGCGGCGGGGGUUaGUAg -5'
28763 5' -50.3 NC_006146.1 + 111311 0.69 0.967116
Target:  5'- --cGGGggACGCCGCCCuCCAG--AUCg -3'
miRNA:   3'- guuUUCuaUGCGGCGGG-GGUUagUAG- -5'
28763 5' -50.3 NC_006146.1 + 111182 0.69 0.973172
Target:  5'- gCGAGAGAUGCGC--CCCCCGAcCAg- -3'
miRNA:   3'- -GUUUUCUAUGCGgcGGGGGUUaGUag -5'
28763 5' -50.3 NC_006146.1 + 2764 0.68 0.978377
Target:  5'- gGGAAGGccgcGCGCCGCCCCCc------ -3'
miRNA:   3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5'
28763 5' -50.3 NC_006146.1 + 3696 0.68 0.978377
Target:  5'- gGGAAGGccgcGCGCCGCCCCCc------ -3'
miRNA:   3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5'
28763 5' -50.3 NC_006146.1 + 56167 0.68 0.978377
Target:  5'- gCAGAGGAUAgGCUGCguucugCCCCuggCAUCc -3'
miRNA:   3'- -GUUUUCUAUgCGGCG------GGGGuuaGUAG- -5'
28763 5' -50.3 NC_006146.1 + 19064 0.68 0.978377
Target:  5'- aCGAGAGAUGUGCCGCCauuCCA-UCAg- -3'
miRNA:   3'- -GUUUUCUAUGCGGCGGg--GGUuAGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.