miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28763 5' -50.3 NC_006146.1 + 31558 0.75 0.761377
Target:  5'- -------gGCGCCGCCCCUAA-CAUCa -3'
miRNA:   3'- guuuucuaUGCGGCGGGGGUUaGUAG- -5'
28763 5' -50.3 NC_006146.1 + 16439 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 22595 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 107144 0.66 0.996817
Target:  5'- gCAGAuAGGcUACGUCGCCCaCCAGaaacaCGUCg -3'
miRNA:   3'- -GUUU-UCU-AUGCGGCGGG-GGUUa----GUAG- -5'
28763 5' -50.3 NC_006146.1 + 159347 0.71 0.922423
Target:  5'- -----cGUGCGCCGCCUCCAG-CAUg -3'
miRNA:   3'- guuuucUAUGCGGCGGGGGUUaGUAg -5'
28763 5' -50.3 NC_006146.1 + 111311 0.69 0.967116
Target:  5'- --cGGGggACGCCGCCCuCCAG--AUCg -3'
miRNA:   3'- guuUUCuaUGCGGCGGG-GGUUagUAG- -5'
28763 5' -50.3 NC_006146.1 + 146796 0.67 0.988098
Target:  5'- ----cGGUGCcaGCCGCCCUCGAcccgCGUCc -3'
miRNA:   3'- guuuuCUAUG--CGGCGGGGGUUa---GUAG- -5'
28763 5' -50.3 NC_006146.1 + 74640 0.67 0.990861
Target:  5'- cCAAGAGAaaagAUGCaCGCCCCCc-UCAa- -3'
miRNA:   3'- -GUUUUCUa---UGCG-GCGGGGGuuAGUag -5'
28763 5' -50.3 NC_006146.1 + 122302 0.66 0.994031
Target:  5'- aCGucAGAUuuGCCaCCCCCA-UCGUCu -3'
miRNA:   3'- -GUuuUCUAugCGGcGGGGGUuAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 13361 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 97676 0.66 0.994031
Target:  5'- gGAAAuGUGCGCCcuGCUCUCGAUgAUCg -3'
miRNA:   3'- gUUUUcUAUGCGG--CGGGGGUUAgUAG- -5'
28763 5' -50.3 NC_006146.1 + 130755 0.67 0.990861
Target:  5'- -cGGAGAagACGCCGCCCUguaccgCAAggaCAUCg -3'
miRNA:   3'- guUUUCUa-UGCGGCGGGG------GUUa--GUAG- -5'
28763 5' -50.3 NC_006146.1 + 125151 0.74 0.818166
Target:  5'- gUAGGAGAggaGCUGCCCCCGGagcagCAUCa -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUa----GUAG- -5'
28763 5' -50.3 NC_006146.1 + 117203 0.66 0.994864
Target:  5'- aGAGAGGUGgcagucucaaacUGCUGCCCCCGggCuUCc -3'
miRNA:   3'- gUUUUCUAU------------GCGGCGGGGGUuaGuAG- -5'
28763 5' -50.3 NC_006146.1 + 149208 0.73 0.868402
Target:  5'- gCAGGAuGUugGCCGCCCCCug-CAg- -3'
miRNA:   3'- -GUUUUcUAugCGGCGGGGGuuaGUag -5'
28763 5' -50.3 NC_006146.1 + 123368 0.67 0.990861
Target:  5'- aGGAGGAccgagGCGgCGCCCCCGA-CAc- -3'
miRNA:   3'- gUUUUCUa----UGCgGCGGGGGUUaGUag -5'
28763 5' -50.3 NC_006146.1 + 121410 0.66 0.99587
Target:  5'- cCGGGAGAgucUGCCcaugaccaacaucagGgCCCCGAUCAUCu -3'
miRNA:   3'- -GUUUUCUau-GCGG---------------CgGGGGUUAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 19517 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5'
28763 5' -50.3 NC_006146.1 + 104232 0.72 0.910425
Target:  5'- aGGGAGGUGCcCCGCCCCCc-UCAg- -3'
miRNA:   3'- gUUUUCUAUGcGGCGGGGGuuAGUag -5'
28763 5' -50.3 NC_006146.1 + 131232 0.67 0.988098
Target:  5'- cCAGGAGcc-CGCCGCCUCCAAggcCAa- -3'
miRNA:   3'- -GUUUUCuauGCGGCGGGGGUUa--GUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.