Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28763 | 5' | -50.3 | NC_006146.1 | + | 118561 | 0.72 | 0.910425 |
Target: 5'- cCAAAAGG-ACGCCGCCCCgGG-CAc- -3' miRNA: 3'- -GUUUUCUaUGCGGCGGGGgUUaGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 19064 | 0.68 | 0.978377 |
Target: 5'- aCGAGAGAUGUGCCGCCauuCCA-UCAg- -3' miRNA: 3'- -GUUUUCUAUGCGGCGGg--GGUuAGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 3696 | 0.68 | 0.978377 |
Target: 5'- gGGAAGGccgcGCGCCGCCCCCc------ -3' miRNA: 3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 2764 | 0.68 | 0.978377 |
Target: 5'- gGGAAGGccgcGCGCCGCCCCCc------ -3' miRNA: 3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 1832 | 0.68 | 0.978377 |
Target: 5'- gGGAAGGccgcGCGCCGCCCCCc------ -3' miRNA: 3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 900 | 0.68 | 0.978377 |
Target: 5'- gGGAAGGccgcGCGCCGCCCCCc------ -3' miRNA: 3'- gUUUUCUa---UGCGGCGGGGGuuaguag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 56167 | 0.68 | 0.978377 |
Target: 5'- gCAGAGGAUAgGCUGCguucugCCCCuggCAUCc -3' miRNA: 3'- -GUUUUCUAUgCGGCG------GGGGuuaGUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 111182 | 0.69 | 0.973172 |
Target: 5'- gCGAGAGAUGCGC--CCCCCGAcCAg- -3' miRNA: 3'- -GUUUUCUAUGCGgcGGGGGUUaGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 23728 | 0.71 | 0.916553 |
Target: 5'- gCGAAGGGgcgccggucUGCGCCGCCgCCgGGUCAa- -3' miRNA: 3'- -GUUUUCU---------AUGCGGCGG-GGgUUAGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 85210 | 0.68 | 0.984544 |
Target: 5'- aCGAGAGAcACGCCaGCCaaagagaaucaggCCCuuUCAUCc -3' miRNA: 3'- -GUUUUCUaUGCGG-CGG-------------GGGuuAGUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 29364 | 0.68 | 0.986494 |
Target: 5'- uGAGGGGUgagGCGCUGCUCCCAuuugCAa- -3' miRNA: 3'- gUUUUCUA---UGCGGCGGGGGUua--GUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 167173 | 0.67 | 0.988098 |
Target: 5'- uGAAGGGccACGCgGCCCCCAGa---- -3' miRNA: 3'- gUUUUCUa-UGCGgCGGGGGUUaguag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 111081 | 0.66 | 0.997311 |
Target: 5'- aCAAAGGGUGC-CCGgUCCCGcgaCAUCu -3' miRNA: 3'- -GUUUUCUAUGcGGCgGGGGUua-GUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 103758 | 0.66 | 0.996249 |
Target: 5'- uCAGGAGcgGCcaGCgGCUCCCGGUCuUCc -3' miRNA: 3'- -GUUUUCuaUG--CGgCGGGGGUUAGuAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 121410 | 0.66 | 0.995601 |
Target: 5'- ---cAGAUgccACGCCGCCCCUGGcCGa- -3' miRNA: 3'- guuuUCUA---UGCGGCGGGGGUUaGUag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 125990 | 0.66 | 0.995532 |
Target: 5'- uCAAGAGAUugucccaGCGCCGgCCgCUCAAgguacCAUCg -3' miRNA: 3'- -GUUUUCUA-------UGCGGC-GG-GGGUUa----GUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 101253 | 0.67 | 0.992992 |
Target: 5'- uGGAGGAggACcgcgggcccauuaGCCGCCCCCAGUa--- -3' miRNA: 3'- gUUUUCUa-UG-------------CGGCGGGGGUUAguag -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 21800 | 0.67 | 0.989551 |
Target: 5'- --cGGGAUgccggGCGCgCGCCCCCGuuGUUAUUc -3' miRNA: 3'- guuUUCUA-----UGCG-GCGGGGGU--UAGUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 167649 | 0.67 | 0.989551 |
Target: 5'- ------cUGCGCCGUCCCCAGgccccUAUCc -3' miRNA: 3'- guuuucuAUGCGGCGGGGGUUa----GUAG- -5' |
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28763 | 5' | -50.3 | NC_006146.1 | + | 74633 | 0.67 | 0.988697 |
Target: 5'- ----uGAUGCGgCGCCCCCuGuaguaggccacguacUCGUCg -3' miRNA: 3'- guuuuCUAUGCgGCGGGGGuU---------------AGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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