Results 41 - 60 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28764 | 5' | -58.7 | NC_006146.1 | + | 129066 | 0.68 | 0.706957 |
Target: 5'- cUGGCCacgGC-CCGGGUGUUuucacagaaaggggaCCGGGUGCa -3' miRNA: 3'- -ACCGGg--CGaGGUCUACAA---------------GGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 33201 | 0.68 | 0.702999 |
Target: 5'- gGGCCUccggguGCUCCuGGUGcUCCGgGGCAg -3' miRNA: 3'- aCCGGG------CGAGGuCUACaAGGU-CCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 15431 | 0.68 | 0.702999 |
Target: 5'- cUGGCCCgGCUgCAGuccugCCuGGCGCa -3' miRNA: 3'- -ACCGGG-CGAgGUCuacaaGGuCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 8509 | 0.68 | 0.702999 |
Target: 5'- cUGGCCCa--CCGGG-GUcCCGGGCGCg -3' miRNA: 3'- -ACCGGGcgaGGUCUaCAaGGUCCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 51377 | 0.68 | 0.68308 |
Target: 5'- uUGGucaCCCGCUUCAGAUGagCCAG-CAUc -3' miRNA: 3'- -ACC---GGGCGAGGUCUACaaGGUCcGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 137898 | 0.68 | 0.68308 |
Target: 5'- gGGucCCCGUggacagggCCGGggGUUCCGGGgGCa -3' miRNA: 3'- aCC--GGGCGa-------GGUCuaCAAGGUCCgUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 118928 | 0.68 | 0.68308 |
Target: 5'- cGGCCCGCaugCCGGAgaccUCCccgucGGCGCc -3' miRNA: 3'- aCCGGGCGa--GGUCUaca-AGGu----CCGUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 133090 | 0.68 | 0.662996 |
Target: 5'- gUGGuCCCGCUCCgAGAgcuuuaagCCGGGUAg -3' miRNA: 3'- -ACC-GGGCGAGG-UCUacaa----GGUCCGUg -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 137165 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 167570 | 0.68 | 0.662996 |
Target: 5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3' miRNA: 3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 168502 | 0.68 | 0.662996 |
Target: 5'- aGGCCCGCggagaggCCGuGUGUggaggCCGGGCc- -3' miRNA: 3'- aCCGGGCGa------GGUcUACAa----GGUCCGug -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 137351 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 137258 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 136886 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 136979 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 136793 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 137537 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 137444 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 136422 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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28764 | 5' | -58.7 | NC_006146.1 | + | 136608 | 0.68 | 0.662996 |
Target: 5'- cUGcCCCGCUCCGGcgGgggguggCCGGGcCGCu -3' miRNA: 3'- -ACcGGGCGAGGUCuaCaa-----GGUCC-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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