miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 33201 0.68 0.702999
Target:  5'- gGGCCUccggguGCUCCuGGUGcUCCGgGGCAg -3'
miRNA:   3'- aCCGGG------CGAGGuCUACaAGGU-CCGUg -5'
28764 5' -58.7 NC_006146.1 + 33265 0.72 0.469934
Target:  5'- cUGcCCCGCUCCGGGUGggggguggcccggCUGGGCACc -3'
miRNA:   3'- -ACcGGGCGAGGUCUACaa-----------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33318 0.71 0.494274
Target:  5'- cGGUCCugggGCUCCGGGg--UCCGGGUGCu -3'
miRNA:   3'- aCCGGG----CGAGGUCUacaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33322 0.72 0.448022
Target:  5'- cGGCCCgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG--CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 33387 0.7 0.548493
Target:  5'- cUGcCCCGCUCCGGGUGggggguggcccgCCuGGGCACc -3'
miRNA:   3'- -ACcGGGCGAGGUCUACaa----------GG-UCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33414 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 33440 0.66 0.779637
Target:  5'- cGGUCCugggGCUCCGGGUGcaCCugaaAGGCAa -3'
miRNA:   3'- aCCGGG----CGAGGUCUACaaGG----UCCGUg -5'
28764 5' -58.7 NC_006146.1 + 33507 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 33600 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 33693 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 33767 0.67 0.751623
Target:  5'- gGGUCCGCuggUCCGGGUGggCguGGUcCg -3'
miRNA:   3'- aCCGGGCG---AGGUCUACaaGguCCGuG- -5'
28764 5' -58.7 NC_006146.1 + 33786 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 33879 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 33953 0.67 0.722685
Target:  5'- gGGUCCGCuggUCCGGGUGggCguGGUccGCu -3'
miRNA:   3'- aCCGGGCG---AGGUCUACaaGguCCG--UG- -5'
28764 5' -58.7 NC_006146.1 + 33971 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 34064 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 34157 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 34250 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 34343 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 34436 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.