miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 581 0.7 0.562356
Target:  5'- gGuGCUCGaCUCagGGGUGUUCUGGGCACc -3'
miRNA:   3'- aC-CGGGC-GAGg-UCUACAAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 598 0.66 0.816003
Target:  5'- cGGCCCgGCgCCAGcccUGcccccucucccccgCCAGGCACa -3'
miRNA:   3'- aCCGGG-CGaGGUCu--ACaa------------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 1529 0.66 0.816003
Target:  5'- cGGCCCgGCgCCAGcccUGcccccucucccccgCCAGGCACa -3'
miRNA:   3'- aCCGGG-CGaGGUCu--ACaa------------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 2202 0.7 0.562356
Target:  5'- aUGGUCCGCggaaaUCCAGcaGUUCCugcgccuccuGGGCACa -3'
miRNA:   3'- -ACCGGGCG-----AGGUCuaCAAGG----------UCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 2461 0.66 0.816003
Target:  5'- cGGCCCgGCgCCAGcccUGcccccucucccccgCCAGGCACa -3'
miRNA:   3'- aCCGGG-CGaGGUCu--ACaa------------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 2769 0.74 0.371271
Target:  5'- aGGCCCaaGC-CCGGAUGUcagggaagacgCCAGGCGCc -3'
miRNA:   3'- aCCGGG--CGaGGUCUACAa----------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 3393 0.66 0.816003
Target:  5'- cGGCCCgGCgCCAGcccUGcccccucucccccgCCAGGCACa -3'
miRNA:   3'- aCCGGG-CGaGGUCu--ACaa------------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 8509 0.68 0.702999
Target:  5'- cUGGCCCa--CCGGG-GUcCCGGGCGCg -3'
miRNA:   3'- -ACCGGGcgaGGUCUaCAaGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 9881 0.74 0.332681
Target:  5'- cGGCCCGCUCacccacaaaGGcgGUgacggCCAGGCAg -3'
miRNA:   3'- aCCGGGCGAGg--------UCuaCAa----GGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 13185 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 13226 0.67 0.736289
Target:  5'- aGGCCUGCggCCAGAcccaGUucuacaucagccuggUCCAGGgGCu -3'
miRNA:   3'- aCCGGGCGa-GGUCUa---CA---------------AGGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 15431 0.68 0.702999
Target:  5'- cUGGCCCgGCUgCAGuccugCCuGGCGCa -3'
miRNA:   3'- -ACCGGG-CGAgGUCuacaaGGuCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 16263 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 19341 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 21775 0.66 0.792328
Target:  5'- -cGCCCGCccaccauucuaagcCCAGcgGgaugCCGGGCGCg -3'
miRNA:   3'- acCGGGCGa-------------GGUCuaCaa--GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 22419 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 25497 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 28575 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33141 0.72 0.469934
Target:  5'- cUGcCCCGCUCCGGGUGggggguggcccggCUGGGCACc -3'
miRNA:   3'- -ACcGGGCGAGGUCUACaa-----------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33163 0.67 0.751623
Target:  5'- cGGaCCCccaggaGCUCCAGAaccggGUaggcCCGGGCACc -3'
miRNA:   3'- aCC-GGG------CGAGGUCUa----CAa---GGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.