miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 156358 0.74 0.340158
Target:  5'- cGGCCCagcaGCUCCAGGgcccggUCCAGGCu- -3'
miRNA:   3'- aCCGGG----CGAGGUCUaca---AGGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 150025 0.71 0.532784
Target:  5'- uUGGCCCGCUCCAGcaucGUGcgCCccuGCAg -3'
miRNA:   3'- -ACCGGGCGAGGUC----UACaaGGuc-CGUg -5'
28764 5' -58.7 NC_006146.1 + 65067 0.7 0.552443
Target:  5'- uUGGCagCGcCUCCGGAUGUcggCCGGGgACc -3'
miRNA:   3'- -ACCGg-GC-GAGGUCUACAa--GGUCCgUG- -5'
28764 5' -58.7 NC_006146.1 + 42714 0.66 0.815147
Target:  5'- aGcGCCCGCUCgGGcUGgcagccgcggaUCCGGGCGg -3'
miRNA:   3'- aC-CGGGCGAGgUCuACa----------AGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 33265 0.72 0.469934
Target:  5'- cUGcCCCGCUCCGGGUGggggguggcccggCUGGGCACc -3'
miRNA:   3'- -ACcGGGCGAGGUCUACaa-----------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 110495 0.72 0.475498
Target:  5'- cGGCCaGgUCCAGGagggugcagaUGUucUCCAGGCGCu -3'
miRNA:   3'- aCCGGgCgAGGUCU----------ACA--AGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 16263 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 19341 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 28575 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 169684 0.71 0.513381
Target:  5'- gUGGCCCGCccCCGGGUcUUCCcGGGCu- -3'
miRNA:   3'- -ACCGGGCGa-GGUCUAcAAGG-UCCGug -5'
28764 5' -58.7 NC_006146.1 + 137772 0.71 0.503788
Target:  5'- cUGGUCCGgUCCGGGUGggCCuGGUcCg -3'
miRNA:   3'- -ACCGGGCgAGGUCUACaaGGuCCGuG- -5'
28764 5' -58.7 NC_006146.1 + 25497 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 2769 0.74 0.371271
Target:  5'- aGGCCCaaGC-CCGGAUGUcagggaagacgCCAGGCGCc -3'
miRNA:   3'- aCCGGG--CGaGGUCUACAa----------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 167820 0.71 0.513381
Target:  5'- gUGGCCCGCccCCGGGUcUUCCcGGGCu- -3'
miRNA:   3'- -ACCGGGCGa-GGUCUAcAAGG-UCCGug -5'
28764 5' -58.7 NC_006146.1 + 79120 0.72 0.435504
Target:  5'- aGGCCCGCgggugCCAGcacggcaccCCAGGCACc -3'
miRNA:   3'- aCCGGGCGa----GGUCuacaa----GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 22419 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 168752 0.71 0.513381
Target:  5'- gUGGCCCGCccCCGGGUcUUCCcGGGCu- -3'
miRNA:   3'- -ACCGGGCGa-GGUCUAcAAGG-UCCGug -5'
28764 5' -58.7 NC_006146.1 + 33387 0.7 0.548493
Target:  5'- cUGcCCCGCUCCGGGUGggggguggcccgCCuGGGCACc -3'
miRNA:   3'- -ACcGGGCGAGGUCUACaa----------GG-UCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33141 0.72 0.469934
Target:  5'- cUGcCCCGCUCCGGGUGggggguggcccggCUGGGCACc -3'
miRNA:   3'- -ACcGGGCGAGGUCUACaa-----------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 13185 0.71 0.494274
Target:  5'- cGGCCUGC-CCGGccucGcUCCGGGCGCc -3'
miRNA:   3'- aCCGGGCGaGGUCua--CaAGGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.