miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 5' -58.7 NC_006146.1 + 132635 1.1 0.001369
Target:  5'- gUGGCCCGCUCCAGAUGUUCCAGGCACa -3'
miRNA:   3'- -ACCGGGCGAGGUCUACAAGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 9881 0.74 0.332681
Target:  5'- cGGCCCGCUCacccacaaaGGcgGUgacggCCAGGCAg -3'
miRNA:   3'- aCCGGGCGAGg--------UCuaCAa----GGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 156358 0.74 0.340158
Target:  5'- cGGCCCagcaGCUCCAGGgcccggUCCAGGCu- -3'
miRNA:   3'- aCCGGG----CGAGGUCUaca---AGGUCCGug -5'
28764 5' -58.7 NC_006146.1 + 127448 0.74 0.363313
Target:  5'- aGGCugCCGCUCCAGAUGUggcggCCcgcAGGCuACu -3'
miRNA:   3'- aCCG--GGCGAGGUCUACAa----GG---UCCG-UG- -5'
28764 5' -58.7 NC_006146.1 + 2769 0.74 0.371271
Target:  5'- aGGCCCaaGC-CCGGAUGUcagggaagacgCCAGGCGCc -3'
miRNA:   3'- aCCGGG--CGaGGUCUACAa----------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 111861 0.73 0.387539
Target:  5'- cGGCCCGCUgcgcccucaccgCCAGcgGUgcguucaCCAGGCAg -3'
miRNA:   3'- aCCGGGCGA------------GGUCuaCAa------GGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 79120 0.72 0.435504
Target:  5'- aGGCCCGCgggugCCAGcacggcaccCCAGGCACc -3'
miRNA:   3'- aCCGGGCGa----GGUCuacaa----GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 127637 0.72 0.43906
Target:  5'- cGGCCCGCUgCCucuUG-UCCAGGcCGCg -3'
miRNA:   3'- aCCGGGCGA-GGucuACaAGGUCC-GUG- -5'
28764 5' -58.7 NC_006146.1 + 33322 0.72 0.448022
Target:  5'- cGGCCCgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG--CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 112730 0.72 0.457084
Target:  5'- aGGCCCGUguacaggCAGGUGgUCgAGGCGCa -3'
miRNA:   3'- aCCGGGCGag-----GUCUACaAGgUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33141 0.72 0.469934
Target:  5'- cUGcCCCGCUCCGGGUGggggguggcccggCUGGGCACc -3'
miRNA:   3'- -ACcGGGCGAGGUCUACaa-----------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 33265 0.72 0.469934
Target:  5'- cUGcCCCGCUCCGGGUGggggguggcccggCUGGGCACc -3'
miRNA:   3'- -ACcGGGCGAGGUCUACaa-----------GGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 73537 0.72 0.475498
Target:  5'- aUGGCCagGCUCCGGAgcuccCCGGGCGg -3'
miRNA:   3'- -ACCGGg-CGAGGUCUacaa-GGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 110495 0.72 0.475498
Target:  5'- cGGCCaGgUCCAGGagggugcagaUGUucUCCAGGCGCu -3'
miRNA:   3'- aCCGGgCgAGGUCU----------ACA--AGGUCCGUG- -5'
28764 5' -58.7 NC_006146.1 + 95782 0.71 0.48203
Target:  5'- cUGGCCCcgGCUCCAGAUccuguacugccccgGUUCCAGauccuGUACu -3'
miRNA:   3'- -ACCGGG--CGAGGUCUA--------------CAAGGUC-----CGUG- -5'
28764 5' -58.7 NC_006146.1 + 35737 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 33971 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 34157 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 34901 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5'
28764 5' -58.7 NC_006146.1 + 34064 0.71 0.484843
Target:  5'- cGGCCCcgaGCUCCAGGa---CCGGGCAg -3'
miRNA:   3'- aCCGGG---CGAGGUCUacaaGGUCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.