miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28765 3' -54.3 NC_006146.1 + 132350 1.08 0.005381
Target:  5'- gUCACUAAGGAACUGGACGGGGUCCUGc -3'
miRNA:   3'- -AGUGAUUCCUUGACCUGCCCCAGGAC- -5'
28765 3' -54.3 NC_006146.1 + 114341 0.75 0.549543
Target:  5'- cCcCUGAcGGAGgUGGACGGGGgCCUGg -3'
miRNA:   3'- aGuGAUU-CCUUgACCUGCCCCaGGAC- -5'
28765 3' -54.3 NC_006146.1 + 161758 0.74 0.645389
Target:  5'- -gGCUGAGGuccgagggggcgcCUGGGCGGGGgCCUGa -3'
miRNA:   3'- agUGAUUCCuu-----------GACCUGCCCCaGGAC- -5'
28765 3' -54.3 NC_006146.1 + 164329 0.73 0.672007
Target:  5'- gUCACUGAG--ACUGGGCGGGGUg--- -3'
miRNA:   3'- -AGUGAUUCcuUGACCUGCCCCAggac -5'
28765 3' -54.3 NC_006146.1 + 118216 0.71 0.770912
Target:  5'- cCGCcc-GGAGCUGGACGauGUCCUGg -3'
miRNA:   3'- aGUGauuCCUUGACCUGCccCAGGAC- -5'
28765 3' -54.3 NC_006146.1 + 51170 0.7 0.816279
Target:  5'- cCGCUGuGGGugUGGAagGGGGUCUg- -3'
miRNA:   3'- aGUGAUuCCUugACCUg-CCCCAGGac -5'
28765 3' -54.3 NC_006146.1 + 170177 0.69 0.8496
Target:  5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3'
miRNA:   3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5'
28765 3' -54.3 NC_006146.1 + 167382 0.69 0.8496
Target:  5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3'
miRNA:   3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5'
28765 3' -54.3 NC_006146.1 + 168314 0.69 0.8496
Target:  5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3'
miRNA:   3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5'
28765 3' -54.3 NC_006146.1 + 169246 0.69 0.8496
Target:  5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3'
miRNA:   3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5'
28765 3' -54.3 NC_006146.1 + 122484 0.69 0.865099
Target:  5'- gUUGCUcGGGGACgGcGGCGGGGUCgaGa -3'
miRNA:   3'- -AGUGAuUCCUUGaC-CUGCCCCAGgaC- -5'
28765 3' -54.3 NC_006146.1 + 127145 0.69 0.886751
Target:  5'- cCGCgu-GGAGCUGGACGGcGUCa-- -3'
miRNA:   3'- aGUGauuCCUUGACCUGCCcCAGgac -5'
28765 3' -54.3 NC_006146.1 + 136986 0.69 0.886751
Target:  5'- cCACcggaccgGAGGAGCUccaGGACGGGGguaggCCg- -3'
miRNA:   3'- aGUGa------UUCCUUGA---CCUGCCCCa----GGac -5'
28765 3' -54.3 NC_006146.1 + 61819 0.68 0.893522
Target:  5'- aCAUUAGGGGcGCUGGugGGGG-CagUGg -3'
miRNA:   3'- aGUGAUUCCU-UGACCugCCCCaGg-AC- -5'
28765 3' -54.3 NC_006146.1 + 12683 0.68 0.893522
Target:  5'- aCGCUGugcaccaacuucAGGAGcCUGGccauugacaAgGGGGUCCUGa -3'
miRNA:   3'- aGUGAU------------UCCUU-GACC---------UgCCCCAGGAC- -5'
28765 3' -54.3 NC_006146.1 + 162449 0.68 0.900063
Target:  5'- aCACUGAGGuuuacACUGGGgaaauUGGGGUCg-- -3'
miRNA:   3'- aGUGAUUCCu----UGACCU-----GCCCCAGgac -5'
28765 3' -54.3 NC_006146.1 + 86309 0.68 0.900063
Target:  5'- -gGCUGgaguAGGAGgccCUGGGCaGGGUCUUGa -3'
miRNA:   3'- agUGAU----UCCUU---GACCUGcCCCAGGAC- -5'
28765 3' -54.3 NC_006146.1 + 137027 0.67 0.923865
Target:  5'- aCACcccgggGAGGAgGCcgGGugGGGG-CCUGg -3'
miRNA:   3'- aGUGa-----UUCCU-UGa-CCugCCCCaGGAC- -5'
28765 3' -54.3 NC_006146.1 + 137214 0.67 0.923865
Target:  5'- aCACcccgggGAGGaAGCcgGGugGGGG-CCUGg -3'
miRNA:   3'- aGUGa-----UUCC-UUGa-CCugCCCCaGGAC- -5'
28765 3' -54.3 NC_006146.1 + 95569 0.67 0.929217
Target:  5'- aCACcugGAcGGAGCUagauguuucugGGGCGGGG-CCUGu -3'
miRNA:   3'- aGUGa--UU-CCUUGA-----------CCUGCCCCaGGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.