Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28765 | 3' | -54.3 | NC_006146.1 | + | 167382 | 0.69 | 0.8496 |
Target: 5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3' miRNA: 3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 127145 | 0.69 | 0.886751 |
Target: 5'- cCGCgu-GGAGCUGGACGGcGUCa-- -3' miRNA: 3'- aGUGauuCCUUGACCUGCCcCAGgac -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 95006 | 0.67 | 0.929217 |
Target: 5'- cCACggcggucAGGAugUGGACGgagaGGGUCCc- -3' miRNA: 3'- aGUGau-----UCCUugACCUGC----CCCAGGac -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 170177 | 0.69 | 0.8496 |
Target: 5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3' miRNA: 3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 86309 | 0.68 | 0.900063 |
Target: 5'- -gGCUGgaguAGGAGgccCUGGGCaGGGUCUUGa -3' miRNA: 3'- agUGAU----UCCUU---GACCUGcCCCAGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 51674 | 0.67 | 0.9392 |
Target: 5'- -aACUGaagGGGGGCgacgGGGCGGGGg-CUGa -3' miRNA: 3'- agUGAU---UCCUUGa---CCUGCCCCagGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 41139 | 0.66 | 0.960025 |
Target: 5'- gUCGCgcucccuggAGGGAcgaggACUGGuCGGGGUCg-- -3' miRNA: 3'- -AGUGa--------UUCCU-----UGACCuGCCCCAGgac -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 169246 | 0.69 | 0.8496 |
Target: 5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3' miRNA: 3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 168314 | 0.69 | 0.8496 |
Target: 5'- -gGCUGAgGGGGCUcccgaGGGCGGGGccggggCCUGg -3' miRNA: 3'- agUGAUU-CCUUGA-----CCUGCCCCa-----GGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 122484 | 0.69 | 0.865099 |
Target: 5'- gUUGCUcGGGGACgGcGGCGGGGUCgaGa -3' miRNA: 3'- -AGUGAuUCCUUGaC-CUGCCCCAGgaC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 137027 | 0.67 | 0.923865 |
Target: 5'- aCACcccgggGAGGAgGCcgGGugGGGG-CCUGg -3' miRNA: 3'- aGUGa-----UUCCU-UGa-CCugCCCCaGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 137214 | 0.67 | 0.923865 |
Target: 5'- aCACcccgggGAGGaAGCcgGGugGGGG-CCUGg -3' miRNA: 3'- aGUGa-----UUCC-UUGa-CCugCCCCaGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 95569 | 0.67 | 0.929217 |
Target: 5'- aCACcugGAcGGAGCUagauguuucugGGGCGGGG-CCUGu -3' miRNA: 3'- aGUGa--UU-CCUUGA-----------CCUGCCCCaGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 21343 | 0.66 | 0.95239 |
Target: 5'- gUCAUUcucgGAGGGGCUGccGGCGGGcuUCCUGc -3' miRNA: 3'- -AGUGA----UUCCUUGAC--CUGCCCc-AGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 116390 | 0.66 | 0.95239 |
Target: 5'- ----aGAGGAGgaGGgaGCGGGGcCCUGg -3' miRNA: 3'- agugaUUCCUUgaCC--UGCCCCaGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 96109 | 0.66 | 0.963507 |
Target: 5'- --uCUAAGGG--UGaGugGGGGUUCUGg -3' miRNA: 3'- aguGAUUCCUugAC-CugCCCCAGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 146263 | 0.66 | 0.963507 |
Target: 5'- -gGCgAGGGGACUGaGGCGGG--CCUGa -3' miRNA: 3'- agUGaUUCCUUGAC-CUGCCCcaGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 149341 | 0.66 | 0.963507 |
Target: 5'- -gGCgAGGGGACUGaGGCGGG--CCUGa -3' miRNA: 3'- agUGaUUCCUUGAC-CUGCCCcaGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 152419 | 0.66 | 0.963507 |
Target: 5'- -gGCgAGGGGACUGaGGCGGG--CCUGa -3' miRNA: 3'- agUGaUUCCUUGAC-CUGCCCcaGGAC- -5' |
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28765 | 3' | -54.3 | NC_006146.1 | + | 158576 | 0.66 | 0.963507 |
Target: 5'- -gGCgAGGGGACUGaGGCGGG--CCUGa -3' miRNA: 3'- agUGaUUCCUUGAC-CUGCCCcaGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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