miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28766 5' -57.8 NC_006146.1 + 130896 1.1 0.001728
Target:  5'- cGUCUGACCGGUCAAAGGCUGCCGGGCc -3'
miRNA:   3'- -CAGACUGGCCAGUUUCCGACGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 145042 0.77 0.300608
Target:  5'- cUCUGGCCGGgcgggCGgggacGGGGCUGCuCGGGUc -3'
miRNA:   3'- cAGACUGGCCa----GU-----UUCCGACG-GCCCG- -5'
28766 5' -57.8 NC_006146.1 + 141964 0.77 0.300608
Target:  5'- cUCUGGCCGGgcgggCGgggacGGGGCUGCuCGGGUc -3'
miRNA:   3'- cAGACUGGCCa----GU-----UUCCGACG-GCCCG- -5'
28766 5' -57.8 NC_006146.1 + 148120 0.77 0.300608
Target:  5'- cUCUGGCCGGgcgggCGgggacGGGGCUGCuCGGGUc -3'
miRNA:   3'- cAGACUGGCCa----GU-----UUCCGACG-GCCCG- -5'
28766 5' -57.8 NC_006146.1 + 151198 0.77 0.300608
Target:  5'- cUCUGGCCGGgcgggCGgggacGGGGCUGCuCGGGUc -3'
miRNA:   3'- cAGACUGGCCa----GU-----UUCCGACG-GCCCG- -5'
28766 5' -57.8 NC_006146.1 + 154276 0.77 0.300608
Target:  5'- cUCUGGCCGGgcgggCGgggacGGGGCUGCuCGGGUc -3'
miRNA:   3'- cAGACUGGCCa----GU-----UUCCGACG-GCCCG- -5'
28766 5' -57.8 NC_006146.1 + 157354 0.77 0.300608
Target:  5'- cUCUGGCCGGgcgggCGgggacGGGGCUGCuCGGGUc -3'
miRNA:   3'- cAGACUGGCCa----GU-----UUCCGACG-GCCCG- -5'
28766 5' -57.8 NC_006146.1 + 131075 0.76 0.336298
Target:  5'- -aCUGugCGG-CcGAGGCcGCCGGGCc -3'
miRNA:   3'- caGACugGCCaGuUUCCGaCGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 74050 0.75 0.351415
Target:  5'- -gCUGACgCGG-CAGAGGCUGaagCGGGCc -3'
miRNA:   3'- caGACUG-GCCaGUUUCCGACg--GCCCG- -5'
28766 5' -57.8 NC_006146.1 + 40999 0.75 0.367008
Target:  5'- -cCUGuCUGGUC-AGGGCgaagaGCCGGGCg -3'
miRNA:   3'- caGACuGGCCAGuUUCCGa----CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 116024 0.73 0.450888
Target:  5'- cUCcGGCCGGUUAAAGGCcuccacggcccgcUGCUGGGg -3'
miRNA:   3'- cAGaCUGGCCAGUUUCCG-------------ACGGCCCg -5'
28766 5' -57.8 NC_006146.1 + 56568 0.73 0.460847
Target:  5'- cGUCc-ACCuccGUCAGGGGCgGCCGGGCg -3'
miRNA:   3'- -CAGacUGGc--CAGUUUCCGaCGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 51085 0.72 0.526717
Target:  5'- cUCUGGCCGGUCccccgccuuGcGCUGCCGGa- -3'
miRNA:   3'- cAGACUGGCCAGuuu------C-CGACGGCCcg -5'
28766 5' -57.8 NC_006146.1 + 111118 0.72 0.533509
Target:  5'- cUCUGcCgGGUCGAcacccucaacccccAGGUgGCCGGGCg -3'
miRNA:   3'- cAGACuGgCCAGUU--------------UCCGaCGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 67213 0.71 0.556034
Target:  5'- --gUGGCCGGUCGccuGGCcgGCCaGGCa -3'
miRNA:   3'- cagACUGGCCAGUuu-CCGa-CGGcCCG- -5'
28766 5' -57.8 NC_006146.1 + 55176 0.71 0.565915
Target:  5'- --gUGACCGcGUCccAGGCUGCggccgcggCGGGCg -3'
miRNA:   3'- cagACUGGC-CAGuuUCCGACG--------GCCCG- -5'
28766 5' -57.8 NC_006146.1 + 158272 0.71 0.575841
Target:  5'- -cCUGGCCgGGUCuAAGGUggccugGCCuGGGCu -3'
miRNA:   3'- caGACUGG-CCAGuUUCCGa-----CGG-CCCG- -5'
28766 5' -57.8 NC_006146.1 + 149037 0.71 0.575841
Target:  5'- -cCUGGCCgGGUCuAAGGUggccugGCCuGGGCu -3'
miRNA:   3'- caGACUGG-CCAGuUUCCGa-----CGG-CCCG- -5'
28766 5' -57.8 NC_006146.1 + 142881 0.71 0.575841
Target:  5'- -cCUGGCCgGGUCuAAGGUggccugGCCuGGGCu -3'
miRNA:   3'- caGACUGG-CCAGuUUCCGa-----CGG-CCCG- -5'
28766 5' -57.8 NC_006146.1 + 152115 0.71 0.575841
Target:  5'- -cCUGGCCgGGUCuAAGGUggccugGCCuGGGCu -3'
miRNA:   3'- caGACUGG-CCAGuUUCCGa-----CGG-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.