miRNA display CGI


Results 1 - 20 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28766 5' -57.8 NC_006146.1 + 131075 0.76 0.336298
Target:  5'- -aCUGugCGG-CcGAGGCcGCCGGGCc -3'
miRNA:   3'- caGACugGCCaGuUUCCGaCGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 135884 0.68 0.735075
Target:  5'- --gUGGCCGGgcc---GCUGCCGGGUc -3'
miRNA:   3'- cagACUGGCCaguuucCGACGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 136070 0.68 0.735075
Target:  5'- --gUGGCCGGgcc---GCUGCCGGGUc -3'
miRNA:   3'- cagACUGGCCaguuucCGACGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 52138 0.66 0.872196
Target:  5'- cUCgGGCCccaccaGGUCGAAGccGCUGCCGuuGGCc -3'
miRNA:   3'- cAGaCUGG------CCAGUUUC--CGACGGC--CCG- -5'
28766 5' -57.8 NC_006146.1 + 111118 0.72 0.533509
Target:  5'- cUCUGcCgGGUCGAcacccucaacccccAGGUgGCCGGGCg -3'
miRNA:   3'- cAGACuGgCCAGUU--------------UCCGaCGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 67213 0.71 0.556034
Target:  5'- --gUGGCCGGUCGccuGGCcgGCCaGGCa -3'
miRNA:   3'- cagACUGGCCAGUuu-CCGa-CGGcCCG- -5'
28766 5' -57.8 NC_006146.1 + 104075 0.69 0.686069
Target:  5'- gGUCcGAUCGGUCAAAGcccaUGUCGGGg -3'
miRNA:   3'- -CAGaCUGGCCAGUUUCcg--ACGGCCCg -5'
28766 5' -57.8 NC_006146.1 + 135123 0.69 0.705861
Target:  5'- gGUUUGcuCCGG-CGGGGGgUgGCCGGGCc -3'
miRNA:   3'- -CAGACu-GGCCaGUUUCCgA-CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 135327 0.68 0.735075
Target:  5'- --gUGGCCGGgcc---GCUGCCGGGUc -3'
miRNA:   3'- cagACUGGCCaguuucCGACGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 135791 0.68 0.735075
Target:  5'- --gUGGCCGGgcc---GCUGCCGGGUc -3'
miRNA:   3'- cagACUGGCCaguuucCGACGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 135513 0.68 0.735075
Target:  5'- --gUGGCCGGgcc---GCUGCCGGGUc -3'
miRNA:   3'- cagACUGGCCaguuucCGACGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 135234 0.68 0.735075
Target:  5'- --gUGGCCGGgcc---GCUGCCGGGUc -3'
miRNA:   3'- cagACUGGCCaguuucCGACGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 40999 0.75 0.367008
Target:  5'- -cCUGuCUGGUC-AGGGCgaagaGCCGGGCg -3'
miRNA:   3'- caGACuGGCCAGuUUCCGa----CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 135606 0.68 0.735075
Target:  5'- --gUGGCCGGgcc---GCUGCCGGGUc -3'
miRNA:   3'- cagACUGGCCaguuucCGACGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 116024 0.73 0.450888
Target:  5'- cUCcGGCCGGUUAAAGGCcuccacggcccgcUGCUGGGg -3'
miRNA:   3'- cAGaCUGGCCAGUUUCCG-------------ACGGCCCg -5'
28766 5' -57.8 NC_006146.1 + 54908 0.69 0.725412
Target:  5'- cGUCUGGCCGGccuUCAGggaccggcaguAGGCcucgacgucUGCCcgcgGGGCg -3'
miRNA:   3'- -CAGACUGGCC---AGUU-----------UCCG---------ACGG----CCCG- -5'
28766 5' -57.8 NC_006146.1 + 135699 0.68 0.735075
Target:  5'- --gUGGCCGGgcc---GCUGCCGGGUc -3'
miRNA:   3'- cagACUGGCCaguuucCGACGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 135977 0.68 0.735075
Target:  5'- --gUGGCCGGgcc---GCUGCCGGGUc -3'
miRNA:   3'- cagACUGGCCaguuucCGACGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 56568 0.73 0.460847
Target:  5'- cGUCc-ACCuccGUCAGGGGCgGCCGGGCg -3'
miRNA:   3'- -CAGacUGGc--CAGUUUCCGaCGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 55176 0.71 0.565915
Target:  5'- --gUGACCGcGUCccAGGCUGCggccgcggCGGGCg -3'
miRNA:   3'- cagACUGGC-CAGuuUCCGACG--------GCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.