miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28767 3' -63.6 NC_006146.1 + 130172 1.1 0.000614
Target:  5'- cCAAGCACGGGCCCGCCUGCCCGGACCu -3'
miRNA:   3'- -GUUCGUGCCCGGGCGGACGGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 103563 0.83 0.055684
Target:  5'- cCGAGgAUGGGCUCGCCcggGCCUGGGCCg -3'
miRNA:   3'- -GUUCgUGCCCGGGCGGa--CGGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 78794 0.77 0.140283
Target:  5'- cCAGGC-CGGGCCCGCCccccaGCagcagccccaggCCGGGCCg -3'
miRNA:   3'- -GUUCGuGCCCGGGCGGa----CG------------GGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 78674 0.76 0.166066
Target:  5'- aCAGGC-CGGGCCCGCCccccaGCagcagccccaggCCGGGCCc -3'
miRNA:   3'- -GUUCGuGCCCGGGCGGa----CG------------GGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 113682 0.76 0.166066
Target:  5'- uCGGGCcCGGGCCCgGCCUccgGCCCGGGg- -3'
miRNA:   3'- -GUUCGuGCCCGGG-CGGA---CGGGCCUgg -5'
28767 3' -63.6 NC_006146.1 + 78584 0.75 0.17418
Target:  5'- cCAGGC-CGGGCCCGCCccccaGCagcagccccaggCCGGGCCc -3'
miRNA:   3'- -GUUCGuGCCCGGGCGGa----CG------------GGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 78734 0.75 0.17418
Target:  5'- cCAGGC-CGGGCCCGCCccccaGCagcagccccaggCCGGGCCc -3'
miRNA:   3'- -GUUCGuGCCCGGGCGGa----CG------------GGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 78852 0.75 0.17418
Target:  5'- cCAGGC-CGGGCCCGCCccccaGCagcagccccaggCCGGGCCc -3'
miRNA:   3'- -GUUCGuGCCCGGGCGGa----CG------------GGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 41872 0.75 0.178368
Target:  5'- -cAGCuCGGGCUgCGCCgUGCCCcGGACCu -3'
miRNA:   3'- guUCGuGCCCGG-GCGG-ACGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 170606 0.75 0.178368
Target:  5'- gCGAGCGCgccGGGCCCGCCcccgggucuuCCCGGGCUc -3'
miRNA:   3'- -GUUCGUG---CCCGGGCGGac--------GGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 136870 0.75 0.187012
Target:  5'- aUAGGCccCGGgaccacGCCCGCCUGCCCcGACCc -3'
miRNA:   3'- -GUUCGu-GCC------CGGGCGGACGGGcCUGG- -5'
28767 3' -63.6 NC_006146.1 + 97852 0.74 0.210251
Target:  5'- gGAGgAgGGGgCCGCCgacCCCGGGCCg -3'
miRNA:   3'- gUUCgUgCCCgGGCGGac-GGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 24266 0.74 0.220223
Target:  5'- cCAGGCcCGGGCCC-CCagGUCuCGGGCCa -3'
miRNA:   3'- -GUUCGuGCCCGGGcGGa-CGG-GCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 18110 0.74 0.220223
Target:  5'- cCAGGCcCGGGCCC-CCagGUCuCGGGCCa -3'
miRNA:   3'- -GUUCGuGCCCGGGcGGa-CGG-GCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 15032 0.74 0.220223
Target:  5'- cCAGGCcCGGGCCC-CCagGUCuCGGGCCa -3'
miRNA:   3'- -GUUCGuGCCCGGGcGGa-CGG-GCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 27344 0.74 0.220223
Target:  5'- cCAGGCcCGGGCCC-CCagGUCuCGGGCCa -3'
miRNA:   3'- -GUUCGuGCCCGGGcGGa-CGG-GCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 21188 0.74 0.220223
Target:  5'- cCAGGCcCGGGCCC-CCagGUCuCGGGCCa -3'
miRNA:   3'- -GUUCGuGCCCGGGcGGa-CGG-GCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 60304 0.74 0.220223
Target:  5'- uGAGCugGGaccccaCCGaCCUGaCCCGGACCg -3'
miRNA:   3'- gUUCGugCCcg----GGC-GGAC-GGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 135247 0.74 0.230596
Target:  5'- --uGC-CGGGUCCG-CUGCCCGGuCCu -3'
miRNA:   3'- guuCGuGCCCGGGCgGACGGGCCuGG- -5'
28767 3' -63.6 NC_006146.1 + 135154 0.74 0.230596
Target:  5'- --uGC-CGGGUCCG-CUGCCCGGuCCu -3'
miRNA:   3'- guuCGuGCCCGGGCgGACGGGCCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.