miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28767 3' -63.6 NC_006146.1 + 665 0.66 0.602578
Target:  5'- gGAGCAUGcccGCCCGaCCccccGCCCcgGGACCc -3'
miRNA:   3'- gUUCGUGCc--CGGGC-GGa---CGGG--CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 700 0.67 0.554868
Target:  5'- --cGCGCuGGCCCccGCCagGCCCcGGCCc -3'
miRNA:   3'- guuCGUGcCCGGG--CGGa-CGGGcCUGG- -5'
28767 3' -63.6 NC_006146.1 + 929 0.68 0.490167
Target:  5'- cCGGGCGCGcGCCgGCCU-CCCGucCCg -3'
miRNA:   3'- -GUUCGUGCcCGGgCGGAcGGGCcuGG- -5'
28767 3' -63.6 NC_006146.1 + 1228 0.66 0.583395
Target:  5'- cCGGGgGCGGGCCaCGCgC-GCCCGccacGCCc -3'
miRNA:   3'- -GUUCgUGCCCGG-GCG-GaCGGGCc---UGG- -5'
28767 3' -63.6 NC_006146.1 + 1596 0.66 0.602578
Target:  5'- gGAGCAUGcccGCCCGaCCccccGCCCcgGGACCc -3'
miRNA:   3'- gUUCGUGCc--CGGGC-GGa---CGGG--CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 1631 0.67 0.554868
Target:  5'- --cGCGCuGGCCCccGCCagGCCCcGGCCc -3'
miRNA:   3'- guuCGUGcCCGGG--CGGa-CGGGcCUGG- -5'
28767 3' -63.6 NC_006146.1 + 1745 0.66 0.608351
Target:  5'- gCAGGCGCcGGCCCcucccgccgGCCauccccacgcgcgGCCCcGGGCCc -3'
miRNA:   3'- -GUUCGUGcCCGGG---------CGGa------------CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 1861 0.68 0.490167
Target:  5'- cCGGGCGCGcGCCgGCCU-CCCGucCCg -3'
miRNA:   3'- -GUUCGUGCcCGGgCGGAcGGGCcuGG- -5'
28767 3' -63.6 NC_006146.1 + 2160 0.66 0.583395
Target:  5'- cCGGGgGCGGGCCaCGCgC-GCCCGccacGCCc -3'
miRNA:   3'- -GUUCgUGCCCGG-GCG-GaCGGGCc---UGG- -5'
28767 3' -63.6 NC_006146.1 + 2528 0.66 0.602578
Target:  5'- gGAGCAUGcccGCCCGaCCccccGCCCcgGGACCc -3'
miRNA:   3'- gUUCGUGCc--CGGGC-GGa---CGGG--CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 2563 0.67 0.554868
Target:  5'- --cGCGCuGGCCCccGCCagGCCCcGGCCc -3'
miRNA:   3'- guuCGUGcCCGGG--CGGa-CGGGcCUGG- -5'
28767 3' -63.6 NC_006146.1 + 2677 0.66 0.608351
Target:  5'- gCAGGCGCcGGCCCcucccgccgGCCauccccacgcgcgGCCCcGGGCCc -3'
miRNA:   3'- -GUUCGUGcCCGGG---------CGGa------------CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 2793 0.68 0.490167
Target:  5'- cCGGGCGCGcGCCgGCCU-CCCGucCCg -3'
miRNA:   3'- -GUUCGUGCcCGGgCGGAcGGGCcuGG- -5'
28767 3' -63.6 NC_006146.1 + 3092 0.66 0.583395
Target:  5'- cCGGGgGCGGGCCaCGCgC-GCCCGccacGCCc -3'
miRNA:   3'- -GUUCgUGCCCGG-GCG-GaCGGGCc---UGG- -5'
28767 3' -63.6 NC_006146.1 + 3460 0.66 0.602578
Target:  5'- gGAGCAUGcccGCCCGaCCccccGCCCcgGGACCc -3'
miRNA:   3'- gUUCGUGCc--CGGGC-GGa---CGGG--CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 3495 0.67 0.554868
Target:  5'- --cGCGCuGGCCCccGCCagGCCCcGGCCc -3'
miRNA:   3'- guuCGUGcCCGGG--CGGa-CGGGcCUGG- -5'
28767 3' -63.6 NC_006146.1 + 3609 0.66 0.608351
Target:  5'- gCAGGCGCcGGCCCcucccgccgGCCauccccacgcgcgGCCCcGGGCCc -3'
miRNA:   3'- -GUUCGUGcCCGGG---------CGGa------------CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 3725 0.68 0.490167
Target:  5'- cCGGGCGCGcGCCgGCCU-CCCGucCCg -3'
miRNA:   3'- -GUUCGUGCcCGGgCGGAcGGGCcuGG- -5'
28767 3' -63.6 NC_006146.1 + 3823 0.69 0.4292
Target:  5'- uCAGGCcagGCGGGgcaccCCCG-CUGCCCuaccGGACCu -3'
miRNA:   3'- -GUUCG---UGCCC-----GGGCgGACGGG----CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 7089 0.71 0.315039
Target:  5'- aAGGCAUGcuaaaauuGGCCCGCCaagGCCCaGGCUg -3'
miRNA:   3'- gUUCGUGC--------CCGGGCGGa--CGGGcCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.