miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28767 3' -63.6 NC_006146.1 + 170606 0.75 0.178368
Target:  5'- gCGAGCGCgccGGGCCCGCCcccgggucuuCCCGGGCUc -3'
miRNA:   3'- -GUUCGUG---CCCGGGCGGac--------GGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 170422 0.66 0.573848
Target:  5'- gAGGgGgGGGuCCCGCgggGCCCGGcgcguGCCg -3'
miRNA:   3'- gUUCgUgCCC-GGGCGga-CGGGCC-----UGG- -5'
28767 3' -63.6 NC_006146.1 + 170317 0.68 0.463514
Target:  5'- -uGGCGcCGGGCCgCGCC--CCCGGcCCc -3'
miRNA:   3'- guUCGU-GCCCGG-GCGGacGGGCCuGG- -5'
28767 3' -63.6 NC_006146.1 + 170191 0.66 0.612202
Target:  5'- cCGAGgGCGGGgCCgggGCCUGgCgGgGGCCa -3'
miRNA:   3'- -GUUCgUGCCCgGG---CGGACgGgC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 170014 0.67 0.554868
Target:  5'- --cGCGCGGccuuccCCCGUCUGCucCCGcGGCCa -3'
miRNA:   3'- guuCGUGCCc-----GGGCGGACG--GGC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 169674 0.73 0.2642
Target:  5'- gCGGGCGCGcguGGCCCGCCcccgggucuuCCCGGGCUc -3'
miRNA:   3'- -GUUCGUGC---CCGGGCGGac--------GGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 169491 0.66 0.573848
Target:  5'- gAGGgGgGGGuCCCGCgggGCCCGGcgcguGCCg -3'
miRNA:   3'- gUUCgUgCCC-GGGCGga-CGGGCC-----UGG- -5'
28767 3' -63.6 NC_006146.1 + 169386 0.68 0.463514
Target:  5'- -uGGCGcCGGGCCgCGCC--CCCGGcCCc -3'
miRNA:   3'- guUCGU-GCCCGG-GCGGacGGGCCuGG- -5'
28767 3' -63.6 NC_006146.1 + 169260 0.66 0.612202
Target:  5'- cCGAGgGCGGGgCCgggGCCUGgCgGgGGCCa -3'
miRNA:   3'- -GUUCgUGCCCgGG---CGGACgGgC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 169163 0.66 0.631483
Target:  5'- -cGGgAgGGGCCggCGCCUGCaggggGGGCCg -3'
miRNA:   3'- guUCgUgCCCGG--GCGGACGgg---CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 169082 0.67 0.554868
Target:  5'- --cGCGCGGccuuccCCCGUCUGCucCCGcGGCCa -3'
miRNA:   3'- guuCGUGCCc-----GGGCGGACG--GGC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 168742 0.73 0.2642
Target:  5'- gCGGGCGCGcguGGCCCGCCcccgggucuuCCCGGGCUc -3'
miRNA:   3'- -GUUCGUGC---CCGGGCGGac--------GGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 168559 0.66 0.573848
Target:  5'- gAGGgGgGGGuCCCGCgggGCCCGGcgcguGCCg -3'
miRNA:   3'- gUUCgUgCCC-GGGCGga-CGGGCC-----UGG- -5'
28767 3' -63.6 NC_006146.1 + 168454 0.68 0.463514
Target:  5'- -uGGCGcCGGGCCgCGCC--CCCGGcCCc -3'
miRNA:   3'- guUCGU-GCCCGG-GCGGacGGGCCuGG- -5'
28767 3' -63.6 NC_006146.1 + 168328 0.66 0.612202
Target:  5'- cCGAGgGCGGGgCCgggGCCUGgCgGgGGCCa -3'
miRNA:   3'- -GUUCgUGCCCgGG---CGGACgGgC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 168231 0.66 0.631483
Target:  5'- -cGGgAgGGGCCggCGCCUGCaggggGGGCCg -3'
miRNA:   3'- guUCgUgCCCGG--GCGGACGgg---CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 168150 0.67 0.554868
Target:  5'- --cGCGCGGccuuccCCCGUCUGCucCCGcGGCCa -3'
miRNA:   3'- guuCGUGCCc-----GGGCGGACG--GGC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 168145 0.67 0.564337
Target:  5'- cCGGGCuuGGGCCUGCgaggGCCgGGuaguACCa -3'
miRNA:   3'- -GUUCGugCCCGGGCGga--CGGgCC----UGG- -5'
28767 3' -63.6 NC_006146.1 + 167810 0.73 0.2642
Target:  5'- gCGGGCGCGcguGGCCCGCCcccgggucuuCCCGGGCUc -3'
miRNA:   3'- -GUUCGUGC---CCGGGCGGac--------GGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 167627 0.66 0.573848
Target:  5'- gAGGgGgGGGuCCCGCgggGCCCGGcgcguGCCg -3'
miRNA:   3'- gUUCgUgCCC-GGGCGga-CGGGCC-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.