miRNA display CGI


Results 21 - 40 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28767 3' -63.6 NC_006146.1 + 167522 0.68 0.463514
Target:  5'- -uGGCGcCGGGCCgCGCC--CCCGGcCCc -3'
miRNA:   3'- guUCGU-GCCCGG-GCGGacGGGCCuGG- -5'
28767 3' -63.6 NC_006146.1 + 167396 0.66 0.612202
Target:  5'- cCGAGgGCGGGgCCgggGCCUGgCgGgGGCCa -3'
miRNA:   3'- -GUUCgUGCCCgGG---CGGACgGgC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 167299 0.66 0.631483
Target:  5'- -cGGgAgGGGCCggCGCCUGCaggggGGGCCg -3'
miRNA:   3'- guUCgUgCCCGG--GCGGACGgg---CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 167218 0.67 0.554868
Target:  5'- --cGCGCGGccuuccCCCGUCUGCucCCGcGGCCa -3'
miRNA:   3'- guuCGUGCCc-----GGGCGGACG--GGC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 167075 0.72 0.288742
Target:  5'- aGGGCAgCGGGggugcCCCGCCUGgCCuGACCc -3'
miRNA:   3'- gUUCGU-GCCC-----GGGCGGACgGGcCUGG- -5'
28767 3' -63.6 NC_006146.1 + 166470 0.69 0.428361
Target:  5'- aGAGCACGaGG-CCGCUUuucaccaGCCCcuGGACCg -3'
miRNA:   3'- gUUCGUGC-CCgGGCGGA-------CGGG--CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 164459 0.69 0.445315
Target:  5'- --uGUugGGGCCCcauggaccccaggGCCcacaugGCCCuGGGCCa -3'
miRNA:   3'- guuCGugCCCGGG-------------CGGa-----CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 160990 0.67 0.517512
Target:  5'- ---uCGCGGGCuCCGucgccuCCUGCCUGG-CCg -3'
miRNA:   3'- guucGUGCCCG-GGC------GGACGGGCCuGG- -5'
28767 3' -63.6 NC_006146.1 + 159044 0.68 0.463514
Target:  5'- --cGU-CGGGCCCGCCccaaGCCCgagaagcaGGGCCc -3'
miRNA:   3'- guuCGuGCCCGGGCGGa---CGGG--------CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 158515 0.68 0.463514
Target:  5'- gAGGCA-GGGCCUGUa-GCCCGuGACUc -3'
miRNA:   3'- gUUCGUgCCCGGGCGgaCGGGC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 158274 0.68 0.49921
Target:  5'- -uGGC-CGGGUCUaaggugGCCUgGCCUGGGCUg -3'
miRNA:   3'- guUCGuGCCCGGG------CGGA-CGGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 157734 0.66 0.621839
Target:  5'- gCAGGC-CGGGCagGCCggGUCUuGGGCCu -3'
miRNA:   3'- -GUUCGuGCCCGggCGGa-CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 157626 0.72 0.284949
Target:  5'- --cGgGCGGGCaCCGCCUgggucuugggcaccaGCCCcuGGACCa -3'
miRNA:   3'- guuCgUGCCCG-GGCGGA---------------CGGG--CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 156695 0.73 0.235935
Target:  5'- gGGGguCGGGCUgGCCUGCCaggGGGCa -3'
miRNA:   3'- gUUCguGCCCGGgCGGACGGg--CCUGg -5'
28767 3' -63.6 NC_006146.1 + 156225 0.7 0.357801
Target:  5'- gGAGaCGCGGGCCC-CCUcgGCCgUGGACg -3'
miRNA:   3'- gUUC-GUGCCCGGGcGGA--CGG-GCCUGg -5'
28767 3' -63.6 NC_006146.1 + 156137 0.66 0.592974
Target:  5'- aCAGGUGCccgaGcCCCGCCUGCCU-GACCu -3'
miRNA:   3'- -GUUCGUGcc--C-GGGCGGACGGGcCUGG- -5'
28767 3' -63.6 NC_006146.1 + 156072 0.68 0.493775
Target:  5'- -cGGCccCGGGCCCGagaccgugcccuccuCCgGCCCGG-CCg -3'
miRNA:   3'- guUCGu-GCCCGGGC---------------GGaCGGGCCuGG- -5'
28767 3' -63.6 NC_006146.1 + 155436 0.68 0.463514
Target:  5'- gAGGCA-GGGCCUGUa-GCCCGuGACUc -3'
miRNA:   3'- gUUCGUgCCCGGGCGgaCGGGC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 155195 0.68 0.49921
Target:  5'- -uGGC-CGGGUCUaaggugGCCUgGCCUGGGCUg -3'
miRNA:   3'- guUCGuGCCCGGG------CGGA-CGGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 154881 0.67 0.536077
Target:  5'- aGAGCccgucgGgGGGCaggGCCUcGCCCGGGCUg -3'
miRNA:   3'- gUUCG------UgCCCGgg-CGGA-CGGGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.