miRNA display CGI


Results 21 - 40 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28767 3' -63.6 NC_006146.1 + 8525 0.66 0.612202
Target:  5'- cCGGGCGCGGGCgCGCCaagggGCUCcaucuCCa -3'
miRNA:   3'- -GUUCGUGCCCGgGCGGa----CGGGccu--GG- -5'
28767 3' -63.6 NC_006146.1 + 11843 0.66 0.583395
Target:  5'- --uGCGcCGGGCCCuGCUU-CUCGGGCUu -3'
miRNA:   3'- guuCGU-GCCCGGG-CGGAcGGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 12320 0.71 0.328852
Target:  5'- cCGGGCuuCaGGCCCGCCUcaguccccucGCCCcuGGGCCu -3'
miRNA:   3'- -GUUCGu-GcCCGGGCGGA----------CGGG--CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 12452 0.66 0.573848
Target:  5'- cCAGGCGCcgGGGCCUuUCagGCCCucGGGCCc -3'
miRNA:   3'- -GUUCGUG--CCCGGGcGGa-CGGG--CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 12529 0.66 0.592974
Target:  5'- --cGCGCa-GCCCGCCUGCCCcGuCUu -3'
miRNA:   3'- guuCGUGccCGGGCGGACGGGcCuGG- -5'
28767 3' -63.6 NC_006146.1 + 13055 0.66 0.612202
Target:  5'- cCAGGCGgcgcuCGGuGCCCGUCcccuCCgGGGCCa -3'
miRNA:   3'- -GUUCGU-----GCC-CGGGCGGac--GGgCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 13168 0.72 0.270173
Target:  5'- cCAAGaCcCGGccuGCCCgGCCUGCCCGG-CCu -3'
miRNA:   3'- -GUUC-GuGCC---CGGG-CGGACGGGCCuGG- -5'
28767 3' -63.6 NC_006146.1 + 13423 0.72 0.282443
Target:  5'- --uGCAa-GGCCCGCCcggucaucacgcUGCCCGuGACCa -3'
miRNA:   3'- guuCGUgcCCGGGCGG------------ACGGGC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 13540 0.7 0.380657
Target:  5'- cCGAGCAgcccCGucCCCGCCcGCCCGG-CCa -3'
miRNA:   3'- -GUUCGU----GCccGGGCGGaCGGGCCuGG- -5'
28767 3' -63.6 NC_006146.1 + 14360 0.66 0.573848
Target:  5'- -cAGUugGCGGGCCUGucagacagcCCUGUCUaGGGCCg -3'
miRNA:   3'- guUCG--UGCCCGGGC---------GGACGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 14522 0.69 0.412612
Target:  5'- -cAGCAUGGGgCUggagaGCCUGgaCCGGGCCc -3'
miRNA:   3'- guUCGUGCCCgGG-----CGGACg-GGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 14830 0.66 0.612202
Target:  5'- aGGGCACGGuCUCGg--GCCCgGGGCCg -3'
miRNA:   3'- gUUCGUGCCcGGGCggaCGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 15032 0.74 0.220223
Target:  5'- cCAGGCcCGGGCCC-CCagGUCuCGGGCCa -3'
miRNA:   3'- -GUUCGuGCCCGGGcGGa-CGG-GCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 15034 0.7 0.37988
Target:  5'- gGGGCGCcuggccaGGGCCCGCCggGCCUGcGAg- -3'
miRNA:   3'- gUUCGUG-------CCCGGGCGGa-CGGGC-CUgg -5'
28767 3' -63.6 NC_006146.1 + 15399 0.71 0.328852
Target:  5'- cCGGGCuuCaGGCCCGCCUcaguccccucGCCCcuGGGCCu -3'
miRNA:   3'- -GUUCGu-GcCCGGGCGGA----------CGGG--CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 15531 0.66 0.573848
Target:  5'- cCAGGCGCcgGGGCCUuUCagGCCCucGGGCCc -3'
miRNA:   3'- -GUUCGUG--CCCGGGcGGa-CGGG--CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 16246 0.72 0.270173
Target:  5'- cCAAGaCcCGGccuGCCCgGCCUGCCCGG-CCu -3'
miRNA:   3'- -GUUC-GuGCC---CGGG-CGGACGGGCCuGG- -5'
28767 3' -63.6 NC_006146.1 + 16618 0.7 0.380657
Target:  5'- cCGAGCAgcccCGucCCCGCCcGCCCGG-CCa -3'
miRNA:   3'- -GUUCGU----GCccGGGCGGaCGGGCCuGG- -5'
28767 3' -63.6 NC_006146.1 + 17438 0.66 0.573848
Target:  5'- -cAGUugGCGGGCCUGucagacagcCCUGUCUaGGGCCg -3'
miRNA:   3'- guUCG--UGCCCGGGC---------GGACGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 17603 0.66 0.602578
Target:  5'- -uGGCcCGGGCCUGg-UGCCUGGAgCa -3'
miRNA:   3'- guUCGuGCCCGGGCggACGGGCCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.