miRNA display CGI


Results 21 - 40 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28767 3' -63.6 NC_006146.1 + 145423 0.66 0.621839
Target:  5'- gCAGGC-CGGGCagGCCggGUCUuGGGCCu -3'
miRNA:   3'- -GUUCGuGCCCGggCGGa-CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 148501 0.66 0.621839
Target:  5'- gCAGGC-CGGGCagGCCggGUCUuGGGCCu -3'
miRNA:   3'- -GUUCGuGCCCGggCGGa-CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 168328 0.66 0.612202
Target:  5'- cCGAGgGCGGGgCCgggGCCUGgCgGgGGCCa -3'
miRNA:   3'- -GUUCgUGCCCgGG---CGGACgGgC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 169260 0.66 0.612202
Target:  5'- cCGAGgGCGGGgCCgggGCCUGgCgGgGGCCa -3'
miRNA:   3'- -GUUCgUGCCCgGG---CGGACgGgC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 167396 0.66 0.612202
Target:  5'- cCGAGgGCGGGgCCgggGCCUGgCgGgGGCCa -3'
miRNA:   3'- -GUUCgUGCCCgGG---CGGACgGgC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 8525 0.66 0.612202
Target:  5'- cCGGGCGCGGGCgCGCCaagggGCUCcaucuCCa -3'
miRNA:   3'- -GUUCGUGCCCGgGCGGa----CGGGccu--GG- -5'
28767 3' -63.6 NC_006146.1 + 170191 0.66 0.612202
Target:  5'- cCGAGgGCGGGgCCgggGCCUGgCgGgGGCCa -3'
miRNA:   3'- -GUUCgUGCCCgGG---CGGACgGgC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 43895 0.66 0.612202
Target:  5'- gCAGGCugGGaGCCCacagaGCU--CCgGGACCg -3'
miRNA:   3'- -GUUCGugCC-CGGG-----CGGacGGgCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 14830 0.66 0.612202
Target:  5'- aGGGCACGGuCUCGg--GCCCgGGGCCg -3'
miRNA:   3'- gUUCGUGCCcGGGCggaCGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 13055 0.66 0.612202
Target:  5'- cCAGGCGgcgcuCGGuGCCCGUCcccuCCgGGGCCa -3'
miRNA:   3'- -GUUCGU-----GCC-CGGGCGGac--GGgCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 74243 0.66 0.612202
Target:  5'- uCAGGCccuGCGcGG-CCGUCUcCCCGGGCUg -3'
miRNA:   3'- -GUUCG---UGC-CCgGGCGGAcGGGCCUGG- -5'
28767 3' -63.6 NC_006146.1 + 3609 0.66 0.608351
Target:  5'- gCAGGCGCcGGCCCcucccgccgGCCauccccacgcgcgGCCCcGGGCCc -3'
miRNA:   3'- -GUUCGUGcCCGGG---------CGGa------------CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 2677 0.66 0.608351
Target:  5'- gCAGGCGCcGGCCCcucccgccgGCCauccccacgcgcgGCCCcGGGCCc -3'
miRNA:   3'- -GUUCGUGcCCGGG---------CGGa------------CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 1745 0.66 0.608351
Target:  5'- gCAGGCGCcGGCCCcucccgccgGCCauccccacgcgcgGCCCcGGGCCc -3'
miRNA:   3'- -GUUCGUGcCCGGG---------CGGa------------CGGG-CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 118637 0.66 0.606426
Target:  5'- gGGGCGCccgGGGCCCaguacacguGCguccaccucuacuuuCUGCCCGaGGCCu -3'
miRNA:   3'- gUUCGUG---CCCGGG---------CG---------------GACGGGC-CUGG- -5'
28767 3' -63.6 NC_006146.1 + 28340 0.66 0.602578
Target:  5'- --cGCACGcaGGCuCCGCCUaGCCUaGGCUg -3'
miRNA:   3'- guuCGUGC--CCG-GGCGGA-CGGGcCUGG- -5'
28767 3' -63.6 NC_006146.1 + 2528 0.66 0.602578
Target:  5'- gGAGCAUGcccGCCCGaCCccccGCCCcgGGACCc -3'
miRNA:   3'- gUUCGUGCc--CGGGC-GGa---CGGG--CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 1596 0.66 0.602578
Target:  5'- gGAGCAUGcccGCCCGaCCccccGCCCcgGGACCc -3'
miRNA:   3'- gUUCGUGCc--CGGGC-GGa---CGGG--CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 665 0.66 0.602578
Target:  5'- gGAGCAUGcccGCCCGaCCccccGCCCcgGGACCc -3'
miRNA:   3'- gUUCGUGCc--CGGGC-GGa---CGGG--CCUGG- -5'
28767 3' -63.6 NC_006146.1 + 69060 0.66 0.602578
Target:  5'- -uGGUGCGGcaGCCCGagcGCUCGGGCCc -3'
miRNA:   3'- guUCGUGCC--CGGGCggaCGGGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.