Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28767 | 5' | -53.3 | NC_006146.1 | + | 48930 | 0.69 | 0.918335 |
Target: 5'- aGGaGGUUUGUGUcGGGGAccaGCCUCAGGg -3' miRNA: 3'- -UC-CCGAGCACA-UCUUUcg-UGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 151301 | 0.69 | 0.912453 |
Target: 5'- cAGGGC-CGUGUAGGAGG-GCC--AGGa -3' miRNA: 3'- -UCCCGaGCACAUCUUUCgUGGagUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 119095 | 0.69 | 0.893363 |
Target: 5'- cGGGGaaCGgGUGGcuuGGCGCCUCAGa -3' miRNA: 3'- -UCCCgaGCaCAUCuu-UCGUGGAGUCc -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 23500 | 0.69 | 0.886527 |
Target: 5'- uGGGCUCGcucUGGGAGGUGCCcgccgugaacUCGGGa -3' miRNA: 3'- uCCCGAGCac-AUCUUUCGUGG----------AGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 156725 | 0.7 | 0.879461 |
Target: 5'- gGGGGCUC----AGAGGGCACCUacucgaggCAGGc -3' miRNA: 3'- -UCCCGAGcacaUCUUUCGUGGA--------GUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 144414 | 0.7 | 0.879461 |
Target: 5'- gGGGGCUC----AGAGGGCACCUacucgaggCAGGc -3' miRNA: 3'- -UCCCGAGcacaUCUUUCGUGGA--------GUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 153648 | 0.7 | 0.879461 |
Target: 5'- gGGGGCUC----AGAGGGCACCUacucgaggCAGGc -3' miRNA: 3'- -UCCCGAGcacaUCUUUCGUGGA--------GUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 150570 | 0.7 | 0.879461 |
Target: 5'- gGGGGCUC----AGAGGGCACCUacucgaggCAGGc -3' miRNA: 3'- -UCCCGAGcacaUCUUUCGUGGA--------GUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 147492 | 0.7 | 0.879461 |
Target: 5'- gGGGGCUC----AGAGGGCACCUacucgaggCAGGc -3' miRNA: 3'- -UCCCGAGcacaUCUUUCGUGGA--------GUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 141336 | 0.7 | 0.879461 |
Target: 5'- gGGGGCUC----AGAGGGCACCUacucgaggCAGGc -3' miRNA: 3'- -UCCCGAGcacaUCUUUCGUGGA--------GUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 139149 | 0.7 | 0.879461 |
Target: 5'- gGGGGCUCccGUcccccgGGggGGCGCCUguGa -3' miRNA: 3'- -UCCCGAGcaCA------UCuuUCGUGGAguCc -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 170374 | 0.7 | 0.875113 |
Target: 5'- gAGaGGCcgUGUGUGGAGgccgggccuccccugGGgGCCUCGGGg -3' miRNA: 3'- -UC-CCGa-GCACAUCUU---------------UCgUGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 169443 | 0.7 | 0.875113 |
Target: 5'- gAGaGGCcgUGUGUGGAGgccgggccuccccugGGgGCCUCGGGg -3' miRNA: 3'- -UC-CCGa-GCACAUCUU---------------UCgUGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 168511 | 0.7 | 0.875113 |
Target: 5'- gAGaGGCcgUGUGUGGAGgccgggccuccccugGGgGCCUCGGGg -3' miRNA: 3'- -UC-CCGa-GCACAUCUU---------------UCgUGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 167579 | 0.7 | 0.875113 |
Target: 5'- gAGaGGCcgUGUGUGGAGgccgggccuccccugGGgGCCUCGGGg -3' miRNA: 3'- -UC-CCGa-GCACAUCUU---------------UCgUGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 14009 | 0.7 | 0.872169 |
Target: 5'- cGGGCUgGUGcUGGAAGGCGgagggCAGGg -3' miRNA: 3'- uCCCGAgCAC-AUCUUUCGUgga--GUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 101074 | 0.7 | 0.848996 |
Target: 5'- cGGGCUCaugcUGUGGGGcAGCACUUCGcGGc -3' miRNA: 3'- uCCCGAGc---ACAUCUU-UCGUGGAGU-CC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 44388 | 0.71 | 0.83253 |
Target: 5'- cGGGGggCGUGUGGGGccgggcacGGCGCCUUccucgAGGg -3' miRNA: 3'- -UCCCgaGCACAUCUU--------UCGUGGAG-----UCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 25698 | 0.71 | 0.824013 |
Target: 5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3' miRNA: 3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 22620 | 0.71 | 0.824013 |
Target: 5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3' miRNA: 3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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