miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28767 5' -53.3 NC_006146.1 + 167274 0.68 0.937484
Target:  5'- cGGGGCcgcgCGUGgggauggccggcgGGAGgggccGGCGCCUgCAGGg -3'
miRNA:   3'- -UCCCGa---GCACa------------UCUU-----UCGUGGA-GUCC- -5'
28767 5' -53.3 NC_006146.1 + 139149 0.7 0.879461
Target:  5'- gGGGGCUCccGUcccccgGGggGGCGCCUguGa -3'
miRNA:   3'- -UCCCGAGcaCA------UCuuUCGUGGAguCc -5'
28767 5' -53.3 NC_006146.1 + 125907 0.66 0.973008
Target:  5'- -cGGCUCGUGgAGucuGCGCCUCcgucGGc -3'
miRNA:   3'- ucCCGAGCACaUCuuuCGUGGAGu---CC- -5'
28767 5' -53.3 NC_006146.1 + 110227 0.67 0.959982
Target:  5'- gAGGGCacacaccacccccUCGUGggucucgauGAGGGUGCaCUCGGGg -3'
miRNA:   3'- -UCCCG-------------AGCACau-------CUUUCGUG-GAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 168206 0.68 0.937484
Target:  5'- cGGGGCcgcgCGUGgggauggccggcgGGAGgggccGGCGCCUgCAGGg -3'
miRNA:   3'- -UCCCGa---GCACa------------UCUU-----UCGUGGA-GUCC- -5'
28767 5' -53.3 NC_006146.1 + 170374 0.7 0.875113
Target:  5'- gAGaGGCcgUGUGUGGAGgccgggccuccccugGGgGCCUCGGGg -3'
miRNA:   3'- -UC-CCGa-GCACAUCUU---------------UCgUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 159907 0.67 0.956627
Target:  5'- cGGGGCccUCGaagaUGGggGGCACCaUCuGGg -3'
miRNA:   3'- -UCCCG--AGCac--AUCuuUCGUGG-AGuCC- -5'
28767 5' -53.3 NC_006146.1 + 169443 0.7 0.875113
Target:  5'- gAGaGGCcgUGUGUGGAGgccgggccuccccugGGgGCCUCGGGg -3'
miRNA:   3'- -UC-CCGa-GCACAUCUU---------------UCgUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 168511 0.7 0.875113
Target:  5'- gAGaGGCcgUGUGUGGAGgccgggccuccccugGGgGCCUCGGGg -3'
miRNA:   3'- -UC-CCGa-GCACAUCUU---------------UCgUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 51831 0.68 0.923972
Target:  5'- cGGGGCg-GcGUGGAGGGgGgCUCGGGg -3'
miRNA:   3'- -UCCCGagCaCAUCUUUCgUgGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 169138 0.68 0.937484
Target:  5'- cGGGGCcgcgCGUGgggauggccggcgGGAGgggccGGCGCCUgCAGGg -3'
miRNA:   3'- -UCCCGa---GCACa------------UCUU-----UCGUGGA-GUCC- -5'
28767 5' -53.3 NC_006146.1 + 119956 0.66 0.980367
Target:  5'- gAGGuCUCG-GUGGggGGUcaggagacGCCUCGGa -3'
miRNA:   3'- -UCCcGAGCaCAUCuuUCG--------UGGAGUCc -5'
28767 5' -53.3 NC_006146.1 + 114223 0.68 0.945874
Target:  5'- cAGGGCcagccccagGGGGcccGGCACCUCAGGg -3'
miRNA:   3'- -UCCCGagcaca---UCUU---UCGUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 85570 0.67 0.960344
Target:  5'- gGGGGCaCGUGggguggcAGGAGGCagccgcccGCCUCGGa -3'
miRNA:   3'- -UCCCGaGCACa------UCUUUCG--------UGGAGUCc -5'
28767 5' -53.3 NC_006146.1 + 54780 0.66 0.967105
Target:  5'- cAGGGC-CGccagGGAgcGCGCCUUGGGc -3'
miRNA:   3'- -UCCCGaGCaca-UCUuuCGUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 155565 0.66 0.975653
Target:  5'- cGGGCUCGcGcGG--GGCGCCcgcCAGGg -3'
miRNA:   3'- uCCCGAGCaCaUCuuUCGUGGa--GUCC- -5'
28767 5' -53.3 NC_006146.1 + 137847 0.68 0.923972
Target:  5'- gGGGGCUCGggGUGGGuGGGCGuguCC-CGGGc -3'
miRNA:   3'- -UCCCGAGCa-CAUCU-UUCGU---GGaGUCC- -5'
28767 5' -53.3 NC_006146.1 + 151301 0.69 0.912453
Target:  5'- cAGGGC-CGUGUAGGAGG-GCC--AGGa -3'
miRNA:   3'- -UCCCGaGCACAUCUUUCgUGGagUCC- -5'
28767 5' -53.3 NC_006146.1 + 145566 0.69 0.918335
Target:  5'- cGGGaaCGUGUGGAugcgcgcguAGgACUUCAGGa -3'
miRNA:   3'- uCCCgaGCACAUCUu--------UCgUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 17697 0.74 0.669549
Target:  5'- cGGGCggccCGUGgcGGccAAGCGCCUgGGGg -3'
miRNA:   3'- uCCCGa---GCACauCU--UUCGUGGAgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.