miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28767 5' -53.3 NC_006146.1 + 55282 0.72 0.759875
Target:  5'- uGGGGCUCGcgGUGGgcAGCAgCCggaaaaagugCAGGg -3'
miRNA:   3'- -UCCCGAGCa-CAUCuuUCGU-GGa---------GUCC- -5'
28767 5' -53.3 NC_006146.1 + 137847 0.68 0.923972
Target:  5'- gGGGGCUCGggGUGGGuGGGCGuguCC-CGGGc -3'
miRNA:   3'- -UCCCGAGCa-CAUCU-UUCGU---GGaGUCC- -5'
28767 5' -53.3 NC_006146.1 + 168206 0.68 0.937484
Target:  5'- cGGGGCcgcgCGUGgggauggccggcgGGAGgggccGGCGCCUgCAGGg -3'
miRNA:   3'- -UCCCGa---GCACa------------UCUU-----UCGUGGA-GUCC- -5'
28767 5' -53.3 NC_006146.1 + 119956 0.66 0.980367
Target:  5'- gAGGuCUCG-GUGGggGGUcaggagacGCCUCGGa -3'
miRNA:   3'- -UCCcGAGCaCAUCuuUCG--------UGGAGUCc -5'
28767 5' -53.3 NC_006146.1 + 19542 0.71 0.824013
Target:  5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3'
miRNA:   3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 22620 0.71 0.824013
Target:  5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3'
miRNA:   3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 28776 0.71 0.824013
Target:  5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3'
miRNA:   3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 44388 0.71 0.83253
Target:  5'- cGGGGggCGUGUGGGGccgggcacGGCGCCUUccucgAGGg -3'
miRNA:   3'- -UCCCgaGCACAUCUU--------UCGUGGAG-----UCC- -5'
28767 5' -53.3 NC_006146.1 + 169443 0.7 0.875113
Target:  5'- gAGaGGCcgUGUGUGGAGgccgggccuccccugGGgGCCUCGGGg -3'
miRNA:   3'- -UC-CCGa-GCACAUCUU---------------UCgUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 51831 0.68 0.923972
Target:  5'- cGGGGCg-GcGUGGAGGGgGgCUCGGGg -3'
miRNA:   3'- -UCCCGagCaCAUCUUUCgUgGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 139149 0.7 0.879461
Target:  5'- gGGGGCUCccGUcccccgGGggGGCGCCUguGa -3'
miRNA:   3'- -UCCCGAGcaCA------UCuuUCGUGGAguCc -5'
28767 5' -53.3 NC_006146.1 + 168511 0.7 0.875113
Target:  5'- gAGaGGCcgUGUGUGGAGgccgggccuccccugGGgGCCUCGGGg -3'
miRNA:   3'- -UC-CCGa-GCACAUCUU---------------UCgUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 51172 0.71 0.815317
Target:  5'- uGGGCU-GUGgagccgGGGAGGCugCUCgAGGa -3'
miRNA:   3'- uCCCGAgCACa-----UCUUUCGugGAG-UCC- -5'
28767 5' -53.3 NC_006146.1 + 151301 0.69 0.912453
Target:  5'- cAGGGC-CGUGUAGGAGG-GCC--AGGa -3'
miRNA:   3'- -UCCCGaGCACAUCUUUCgUGGagUCC- -5'
28767 5' -53.3 NC_006146.1 + 13386 0.71 0.824013
Target:  5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3'
miRNA:   3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 167579 0.7 0.875113
Target:  5'- gAGaGGCcgUGUGUGGAGgccgggccuccccugGGgGCCUCGGGg -3'
miRNA:   3'- -UC-CCGa-GCACAUCUU---------------UCgUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 145566 0.69 0.918335
Target:  5'- cGGGaaCGUGUGGAugcgcgcguAGgACUUCAGGa -3'
miRNA:   3'- uCCCgaGCACAUCUu--------UCgUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 167274 0.68 0.937484
Target:  5'- cGGGGCcgcgCGUGgggauggccggcgGGAGgggccGGCGCCUgCAGGg -3'
miRNA:   3'- -UCCCGa---GCACa------------UCUU-----UCGUGGA-GUCC- -5'
28767 5' -53.3 NC_006146.1 + 16464 0.71 0.824013
Target:  5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3'
miRNA:   3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5'
28767 5' -53.3 NC_006146.1 + 25698 0.71 0.824013
Target:  5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3'
miRNA:   3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.