Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28767 | 5' | -53.3 | NC_006146.1 | + | 4479 | 0.68 | 0.944077 |
Target: 5'- gGGGGCUgGUuacgugucuuGUGGAGauGGCACUggCGGGc -3' miRNA: 3'- -UCCCGAgCA----------CAUCUU--UCGUGGa-GUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 12837 | 0.66 | 0.980367 |
Target: 5'- cGGcGGC-CGgacccgAGGAGGCGCCUgGGGc -3' miRNA: 3'- -UC-CCGaGCaca---UCUUUCGUGGAgUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 13386 | 0.71 | 0.824013 |
Target: 5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3' miRNA: 3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 14009 | 0.7 | 0.872169 |
Target: 5'- cGGGCUgGUGcUGGAAGGCGgagggCAGGg -3' miRNA: 3'- uCCCGAgCAC-AUCUUUCGUgga--GUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 14819 | 0.66 | 0.967105 |
Target: 5'- cGGGC-CG-GaGGAGGGCACgguCUCGGGc -3' miRNA: 3'- uCCCGaGCaCaUCUUUCGUG---GAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 16464 | 0.71 | 0.824013 |
Target: 5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3' miRNA: 3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 17697 | 0.74 | 0.669549 |
Target: 5'- cGGGCggccCGUGgcGGccAAGCGCCUgGGGg -3' miRNA: 3'- uCCCGa---GCACauCU--UUCGUGGAgUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 19542 | 0.71 | 0.824013 |
Target: 5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3' miRNA: 3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 22620 | 0.71 | 0.824013 |
Target: 5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3' miRNA: 3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 23500 | 0.69 | 0.886527 |
Target: 5'- uGGGCUCGcucUGGGAGGUGCCcgccgugaacUCGGGa -3' miRNA: 3'- uCCCGAGCac-AUCUUUCGUGG----------AGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 25698 | 0.71 | 0.824013 |
Target: 5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3' miRNA: 3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 28776 | 0.71 | 0.824013 |
Target: 5'- cAGGGCcccuaGUccAGAggacggagGAGCACCUCAGGg -3' miRNA: 3'- -UCCCGag---CAcaUCU--------UUCGUGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 44388 | 0.71 | 0.83253 |
Target: 5'- cGGGGggCGUGUGGGGccgggcacGGCGCCUUccucgAGGg -3' miRNA: 3'- -UCCCgaGCACAUCUU--------UCGUGGAG-----UCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 44760 | 0.68 | 0.944077 |
Target: 5'- cGGGCUCucgGgggAGAGGGUGCCgugccgggcUCAGGg -3' miRNA: 3'- uCCCGAGca-Ca--UCUUUCGUGG---------AGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 48930 | 0.69 | 0.918335 |
Target: 5'- aGGaGGUUUGUGUcGGGGAccaGCCUCAGGg -3' miRNA: 3'- -UC-CCGAGCACA-UCUUUcg-UGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 51172 | 0.71 | 0.815317 |
Target: 5'- uGGGCU-GUGgagccgGGGAGGCugCUCgAGGa -3' miRNA: 3'- uCCCGAgCACa-----UCUUUCGugGAG-UCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 51831 | 0.68 | 0.923972 |
Target: 5'- cGGGGCg-GcGUGGAGGGgGgCUCGGGg -3' miRNA: 3'- -UCCCGagCaCAUCUUUCgUgGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 54780 | 0.66 | 0.967105 |
Target: 5'- cAGGGC-CGccagGGAgcGCGCCUUGGGc -3' miRNA: 3'- -UCCCGaGCaca-UCUuuCGUGGAGUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 55282 | 0.72 | 0.759875 |
Target: 5'- uGGGGCUCGcgGUGGgcAGCAgCCggaaaaagugCAGGg -3' miRNA: 3'- -UCCCGAGCa-CAUCuuUCGU-GGa---------GUCC- -5' |
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28767 | 5' | -53.3 | NC_006146.1 | + | 57882 | 0.66 | 0.980367 |
Target: 5'- cGGGC-CGacagccggGUGGAAcGGCGCCUugucCAGGa -3' miRNA: 3'- uCCCGaGCa-------CAUCUU-UCGUGGA----GUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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