miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28768 3' -59 NC_006146.1 + 24372 0.75 0.316042
Target:  5'- cGCAgGGCCAGCUCCAGggCgcGGcGCCu -3'
miRNA:   3'- -UGU-CCGGUCGGGGUCuaGauCCuCGG- -5'
28768 3' -59 NC_006146.1 + 15317 0.75 0.316042
Target:  5'- -gAGGCCAGCCCCGGugugcccCUGGcGGGCg -3'
miRNA:   3'- ugUCCGGUCGGGGUCua-----GAUC-CUCGg -5'
28768 3' -59 NC_006146.1 + 98984 0.74 0.33048
Target:  5'- cCAGGUCAGgCCCAGGUC-AGaGGCCg -3'
miRNA:   3'- uGUCCGGUCgGGGUCUAGaUCcUCGG- -5'
28768 3' -59 NC_006146.1 + 131198 0.74 0.345397
Target:  5'- uGCAGGCCucuGCCuCCGGAgcggcgCUgcaggcccAGGAGCCc -3'
miRNA:   3'- -UGUCCGGu--CGG-GGUCUa-----GA--------UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 20521 0.73 0.376659
Target:  5'- gGCGGGCCugucagacAGCCCU--GUCUAGG-GCCg -3'
miRNA:   3'- -UGUCCGG--------UCGGGGucUAGAUCCuCGG- -5'
28768 3' -59 NC_006146.1 + 17443 0.73 0.376659
Target:  5'- gGCGGGCCugucagacAGCCCU--GUCUAGG-GCCg -3'
miRNA:   3'- -UGUCCGG--------UCGGGGucUAGAUCCuCGG- -5'
28768 3' -59 NC_006146.1 + 14365 0.73 0.376659
Target:  5'- gGCGGGCCugucagacAGCCCU--GUCUAGG-GCCg -3'
miRNA:   3'- -UGUCCGG--------UCGGGGucUAGAUCCuCGG- -5'
28768 3' -59 NC_006146.1 + 26677 0.73 0.376659
Target:  5'- gGCGGGCCugucagacAGCCCU--GUCUAGG-GCCg -3'
miRNA:   3'- -UGUCCGG--------UCGGGGucUAGAUCCuCGG- -5'
28768 3' -59 NC_006146.1 + 23599 0.73 0.376659
Target:  5'- gGCGGGCCugucagacAGCCCU--GUCUAGG-GCCg -3'
miRNA:   3'- -UGUCCGG--------UCGGGGucUAGAUCCuCGG- -5'
28768 3' -59 NC_006146.1 + 154656 0.73 0.392162
Target:  5'- gGCAGGCCGGgCaggCCGGGUCUugggccuGGGAGUCc -3'
miRNA:   3'- -UGUCCGGUCgG---GGUCUAGA-------UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 70620 0.73 0.392989
Target:  5'- uGCAGGCCugccAGCCCCcg--CUAGGAGgCu -3'
miRNA:   3'- -UGUCCGG----UCGGGGucuaGAUCCUCgG- -5'
28768 3' -59 NC_006146.1 + 75114 0.73 0.401325
Target:  5'- -gGGGCCAGUacaGGAUCU-GGAGCCg -3'
miRNA:   3'- ugUCCGGUCGgggUCUAGAuCCUCGG- -5'
28768 3' -59 NC_006146.1 + 75066 0.73 0.401325
Target:  5'- -gGGGCCAGUacaGGAUCU-GGAGCCg -3'
miRNA:   3'- ugUCCGGUCGgggUCUAGAuCCUCGG- -5'
28768 3' -59 NC_006146.1 + 75042 0.73 0.401325
Target:  5'- -gGGGCCAGUacaGGAUCU-GGAGCCg -3'
miRNA:   3'- ugUCCGGUCGgggUCUAGAuCCUCGG- -5'
28768 3' -59 NC_006146.1 + 81844 0.72 0.426995
Target:  5'- aGCAGGCUccAuaCCCGGGcuaCUGGGAGCCu -3'
miRNA:   3'- -UGUCCGG--UcgGGGUCUa--GAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 3509 0.72 0.426995
Target:  5'- cCAGGCCccGGCCCCGcc-CUcGGGAGCCc -3'
miRNA:   3'- uGUCCGG--UCGGGGUcuaGA-UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 714 0.72 0.426995
Target:  5'- cCAGGCCccGGCCCCGcc-CUcGGGAGCCc -3'
miRNA:   3'- uGUCCGG--UCGGGGUcuaGA-UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 36764 0.72 0.426995
Target:  5'- cGCAGGCCgcguaaggggguGGCCCUAGGUgUuaggAGGGGCa -3'
miRNA:   3'- -UGUCCGG------------UCGGGGUCUAgA----UCCUCGg -5'
28768 3' -59 NC_006146.1 + 2577 0.72 0.426995
Target:  5'- cCAGGCCccGGCCCCGcc-CUcGGGAGCCc -3'
miRNA:   3'- uGUCCGG--UCGGGGUcuaGA-UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 1645 0.72 0.426995
Target:  5'- cCAGGCCccGGCCCCGcc-CUcGGGAGCCc -3'
miRNA:   3'- uGUCCGG--UCGGGGUcuaGA-UCCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.