miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 3' -60.5 NC_006146.1 + 2409 0.67 0.661913
Target:  5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3'
miRNA:   3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 1477 0.67 0.661913
Target:  5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3'
miRNA:   3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 546 0.67 0.661913
Target:  5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3'
miRNA:   3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 124117 0.73 0.368848
Target:  5'- uGCC-CUCgCGCCggcCGGCCAGCCAu--- -3'
miRNA:   3'- -CGGaGAG-GCGGa--GCCGGUCGGUcauc -5'
28769 3' -60.5 NC_006146.1 + 59358 0.72 0.409262
Target:  5'- aGCCUCUCaaagGCCUUGGCCuuuucguuGGUCAGgAGg -3'
miRNA:   3'- -CGGAGAGg---CGGAGCCGG--------UCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 103670 0.71 0.425327
Target:  5'- aGCCUCcguggcuUCCuguGCCU-GGCCGGCCAGgcGa -3'
miRNA:   3'- -CGGAG-------AGG---CGGAgCCGGUCGGUCauC- -5'
28769 3' -60.5 NC_006146.1 + 39828 0.71 0.434797
Target:  5'- gGCCcggCgGCCUCGGCC-GCaCAGUGGg -3'
miRNA:   3'- -CGGagaGgCGGAGCCGGuCG-GUCAUC- -5'
28769 3' -60.5 NC_006146.1 + 42553 0.7 0.516482
Target:  5'- gGCCUgUCCGuCCgUCGGCUucaucuccagGGCCAGcAGg -3'
miRNA:   3'- -CGGAgAGGC-GG-AGCCGG----------UCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 117869 0.7 0.516482
Target:  5'- aCCUCUCggcggcgGCCgCGGCCAGCCGcGUGa -3'
miRNA:   3'- cGGAGAGg------CGGaGCCGGUCGGU-CAUc -5'
28769 3' -60.5 NC_006146.1 + 115428 0.69 0.564455
Target:  5'- gGCCUCguucUCGCCcgCGGCCaucgAGCgGGUGGc -3'
miRNA:   3'- -CGGAGa---GGCGGa-GCCGG----UCGgUCAUC- -5'
28769 3' -60.5 NC_006146.1 + 117586 0.69 0.545096
Target:  5'- gGCCUcCUCgGgCUCGGacuCCGGCCAGggagAGg -3'
miRNA:   3'- -CGGA-GAGgCgGAGCC---GGUCGGUCa---UC- -5'
28769 3' -60.5 NC_006146.1 + 104104 0.69 0.583989
Target:  5'- cGCCUCaugcgCCGCCUgGGCCcgguGuCCAGg-- -3'
miRNA:   3'- -CGGAGa----GGCGGAgCCGGu---C-GGUCauc -5'
28769 3' -60.5 NC_006146.1 + 117159 0.68 0.593809
Target:  5'- cGCCcgUCUUCGCCcCGGCgCAGCCGc--- -3'
miRNA:   3'- -CGG--AGAGGCGGaGCCG-GUCGGUcauc -5'
28769 3' -60.5 NC_006146.1 + 115099 0.68 0.63328
Target:  5'- gGCCUCUuccaCCGCCccgagucgcUGGCCAGCgUGGUGGc -3'
miRNA:   3'- -CGGAGA----GGCGGa--------GCCGGUCG-GUCAUC- -5'
28769 3' -60.5 NC_006146.1 + 141771 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 144849 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 147927 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 151005 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 154083 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 157161 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.