Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 54895 | 0.66 | 0.757983 |
Target: 5'- gGUCcgCUCgCGCCgucUGGCCGGCCuucagggaccggcAGUAGg -3' miRNA: 3'- -CGGa-GAG-GCGGa--GCCGGUCGG-------------UCAUC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 78941 | 0.68 | 0.593809 |
Target: 5'- uGCCUCcCCaGgCUCcuaaaaggggcaGGCCuGCCAGUAGa -3' miRNA: 3'- -CGGAGaGG-CgGAG------------CCGGuCGGUCAUC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 28815 | 0.69 | 0.583989 |
Target: 5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3' miRNA: 3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 117586 | 0.69 | 0.545096 |
Target: 5'- gGCCUcCUCgGgCUCGGacuCCGGCCAGggagAGg -3' miRNA: 3'- -CGGA-GAGgCgGAGCC---GGUCGGUCa---UC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 23452 | 0.66 | 0.721294 |
Target: 5'- uGCCcgUCUCgGCCUacgaGGCCcuGGCC-GUGGc -3' miRNA: 3'- -CGG--AGAGgCGGAg---CCGG--UCGGuCAUC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 100736 | 0.66 | 0.721294 |
Target: 5'- gGCCUCgCCggccaccagcGCCcCGGCCaggAGCCAGgcGa -3' miRNA: 3'- -CGGAGaGG----------CGGaGCCGG---UCGGUCauC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 115137 | 0.66 | 0.730825 |
Target: 5'- nGCCUCgCUGCCccUGGCCcgccGCCGGgcGg -3' miRNA: 3'- -CGGAGaGGCGGa-GCCGGu---CGGUCauC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 107857 | 0.67 | 0.692307 |
Target: 5'- uGCgUCUCCGCuCUaGGCCAGUgGuGUAa -3' miRNA: 3'- -CGgAGAGGCG-GAgCCGGUCGgU-CAUc -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 62836 | 0.67 | 0.692307 |
Target: 5'- cCCUggCCGCCgUGGCCAGgCCGG-AGg -3' miRNA: 3'- cGGAgaGGCGGaGCCGGUC-GGUCaUC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 80271 | 0.67 | 0.692307 |
Target: 5'- cGCCUCccaaaccacccUCCcuuuuuaccacuGCCUCGGCCA-CCAG-AGg -3' miRNA: 3'- -CGGAG-----------AGG------------CGGAGCCGGUcGGUCaUC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 104104 | 0.69 | 0.583989 |
Target: 5'- cGCCUCaugcgCCGCCUgGGCCcgguGuCCAGg-- -3' miRNA: 3'- -CGGAGa----GGCGGAgCCGGu---C-GGUCauc -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 117159 | 0.68 | 0.593809 |
Target: 5'- cGCCcgUCUUCGCCcCGGCgCAGCCGc--- -3' miRNA: 3'- -CGG--AGAGGCGGaGCCG-GUCGGUcauc -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 115099 | 0.68 | 0.63328 |
Target: 5'- gGCCUCUuccaCCGCCccgagucgcUGGCCAGCgUGGUGGc -3' miRNA: 3'- -CGGAGA----GGCGGa--------GCCGGUCG-GUCAUC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 141771 | 0.67 | 0.653039 |
Target: 5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3' miRNA: 3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 144849 | 0.67 | 0.653039 |
Target: 5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3' miRNA: 3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 151005 | 0.67 | 0.653039 |
Target: 5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3' miRNA: 3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 147927 | 0.67 | 0.653039 |
Target: 5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3' miRNA: 3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 154083 | 0.67 | 0.653039 |
Target: 5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3' miRNA: 3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 61718 | 0.67 | 0.692307 |
Target: 5'- aGCC-CUCUGUCUgGGCCucagacuaagGGCCGGg-- -3' miRNA: 3'- -CGGaGAGGCGGAgCCGG----------UCGGUCauc -5' |
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28769 | 3' | -60.5 | NC_006146.1 | + | 20407 | 0.67 | 0.692307 |
Target: 5'- uGCC-CUCCGCCUCcgacagggacGGCUA-CCAGgGGg -3' miRNA: 3'- -CGGaGAGGCGGAG----------CCGGUcGGUCaUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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