miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 3' -60.5 NC_006146.1 + 22659 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 19581 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 13712 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 53175 0.71 0.426183
Target:  5'- gGCCggaaggCUCgGCCUCGGCCccGGCCuugGGg -3'
miRNA:   3'- -CGGa-----GAGgCGGAGCCGG--UCGGucaUC- -5'
28769 3' -60.5 NC_006146.1 + 106668 0.66 0.721294
Target:  5'- cCCUC-CCGCCcCGGCCcaGGCgCAGa-- -3'
miRNA:   3'- cGGAGaGGCGGaGCCGG--UCG-GUCauc -5'
28769 3' -60.5 NC_006146.1 + 161003 0.68 0.623396
Target:  5'- cGCCUC-CUGCCU-GGCCGucaccGCCuuuGUGGg -3'
miRNA:   3'- -CGGAGaGGCGGAgCCGGU-----CGGu--CAUC- -5'
28769 3' -60.5 NC_006146.1 + 13425 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 150202 0.72 0.392766
Target:  5'- aGCUUCUUaauggccuUGCgCUUGGCCAGCCAGgAGg -3'
miRNA:   3'- -CGGAGAG--------GCG-GAGCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 47479 0.68 0.613518
Target:  5'- aGCCUCUucagcUCGCCgaucuggucuUCGGCCgccgcGGCCAGUu- -3'
miRNA:   3'- -CGGAGA-----GGCGG----------AGCCGG-----UCGGUCAuc -5'
28769 3' -60.5 NC_006146.1 + 45105 0.72 0.376709
Target:  5'- gGCCauUCUCCGgCUCGGCCGgugaccGCCGGg-- -3'
miRNA:   3'- -CGG--AGAGGCgGAGCCGGU------CGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 16503 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 25737 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 29101 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 16790 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 1218 0.71 0.470231
Target:  5'- cGCCUCUgCGCuCUUGGCCGGUggCAGc-- -3'
miRNA:   3'- -CGGAGAgGCG-GAGCCGGUCG--GUCauc -5'
28769 3' -60.5 NC_006146.1 + 55535 0.71 0.426183
Target:  5'- gGCCUCcagcUCCGCCgccacGCCGGCCAGg-- -3'
miRNA:   3'- -CGGAG----AGGCGGagc--CGGUCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 47642 0.66 0.756136
Target:  5'- aGCCgUCUCUgGCCgCGGCCcggcccagcgcggcGGCCAGg-- -3'
miRNA:   3'- -CGG-AGAGG-CGGaGCCGG--------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 110436 0.66 0.730825
Target:  5'- gGCCUCUcaCCGCUccccgCGGCCuGCCGc--- -3'
miRNA:   3'- -CGGAGA--GGCGGa----GCCGGuCGGUcauc -5'
28769 3' -60.5 NC_006146.1 + 55752 0.67 0.692307
Target:  5'- aUCUCcaCCGCCcggCGGCgGGCCAGg-- -3'
miRNA:   3'- cGGAGa-GGCGGa--GCCGgUCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 137798 0.68 0.642176
Target:  5'- cGCCggaUCCGCUUCGgggguccGCCGGuCCGGUGc -3'
miRNA:   3'- -CGGag-AGGCGGAGC-------CGGUC-GGUCAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.