miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 3' -60.5 NC_006146.1 + 39828 0.71 0.434797
Target:  5'- gGCCcggCgGCCUCGGCC-GCaCAGUGGg -3'
miRNA:   3'- -CGGagaGgCGGAGCCGGuCG-GUCAUC- -5'
28769 3' -60.5 NC_006146.1 + 42553 0.7 0.516482
Target:  5'- gGCCUgUCCGuCCgUCGGCUucaucuccagGGCCAGcAGg -3'
miRNA:   3'- -CGGAgAGGC-GG-AGCCGG----------UCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 42788 0.66 0.730825
Target:  5'- cGCgUggCCGCCUCGGCCAGgUuGgcGg -3'
miRNA:   3'- -CGgAgaGGCGGAGCCGGUCgGuCauC- -5'
28769 3' -60.5 NC_006146.1 + 43322 0.7 0.507077
Target:  5'- gGCCggcgCgGCCUCGGCCgcccagGGCCAGcAGg -3'
miRNA:   3'- -CGGaga-GgCGGAGCCGG------UCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 45105 0.72 0.376709
Target:  5'- gGCCauUCUCCGgCUCGGCCGgugaccGCCGGg-- -3'
miRNA:   3'- -CGG--AGAGGCgGAGCCGGU------CGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 46317 0.74 0.324083
Target:  5'- cCCUCUUCcUCUCGGCCgggcuucugaccAGCCGGUAGg -3'
miRNA:   3'- cGGAGAGGcGGAGCCGG------------UCGGUCAUC- -5'
28769 3' -60.5 NC_006146.1 + 47479 0.68 0.613518
Target:  5'- aGCCUCUucagcUCGCCgaucuggucuUCGGCCgccgcGGCCAGUu- -3'
miRNA:   3'- -CGGAGA-----GGCGG----------AGCCGG-----UCGGUCAuc -5'
28769 3' -60.5 NC_006146.1 + 47642 0.66 0.756136
Target:  5'- aGCCgUCUCUgGCCgCGGCCcggcccagcgcggcGGCCAGg-- -3'
miRNA:   3'- -CGG-AGAGG-CGGaGCCGG--------------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 47878 0.69 0.535496
Target:  5'- aCCUgggCCGCCUCGGCCucGGUCAGc-- -3'
miRNA:   3'- cGGAga-GGCGGAGCCGG--UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 50339 0.75 0.283492
Target:  5'- uGCCaUCcgCgGCCUCGGCCAGCCug-GGg -3'
miRNA:   3'- -CGG-AGa-GgCGGAGCCGGUCGGucaUC- -5'
28769 3' -60.5 NC_006146.1 + 50399 0.68 0.643164
Target:  5'- cGCggCUCgCGuCCUCGGCC-GCCAGg-- -3'
miRNA:   3'- -CGgaGAG-GC-GGAGCCGGuCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 51777 0.67 0.702027
Target:  5'- gGCCUCUCUGCCcagagcCGaGuCCAGCCAc--- -3'
miRNA:   3'- -CGGAGAGGCGGa-----GC-C-GGUCGGUcauc -5'
28769 3' -60.5 NC_006146.1 + 53175 0.71 0.426183
Target:  5'- gGCCggaaggCUCgGCCUCGGCCccGGCCuugGGg -3'
miRNA:   3'- -CGGa-----GAGgCGGAGCCGG--UCGGucaUC- -5'
28769 3' -60.5 NC_006146.1 + 53727 0.66 0.758905
Target:  5'- uCCUCUCCgggaGCCgCGGCUGcGCCGGg-- -3'
miRNA:   3'- cGGAGAGG----CGGaGCCGGU-CGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 54895 0.66 0.757983
Target:  5'- gGUCcgCUCgCGCCgucUGGCCGGCCuucagggaccggcAGUAGg -3'
miRNA:   3'- -CGGa-GAG-GCGGa--GCCGGUCGG-------------UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 55535 0.71 0.426183
Target:  5'- gGCCUCcagcUCCGCCgccacGCCGGCCAGg-- -3'
miRNA:   3'- -CGGAG----AGGCGGagc--CGGUCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 55752 0.67 0.692307
Target:  5'- aUCUCcaCCGCCcggCGGCgGGCCAGg-- -3'
miRNA:   3'- cGGAGa-GGCGGa--GCCGgUCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 58160 0.67 0.702027
Target:  5'- gGCUUCUgCGCCUCGaCCAccuGCCuGUAc -3'
miRNA:   3'- -CGGAGAgGCGGAGCcGGU---CGGuCAUc -5'
28769 3' -60.5 NC_006146.1 + 58530 0.66 0.758905
Target:  5'- --aUCUCUGCaagCGGCCGGUCAGc-- -3'
miRNA:   3'- cggAGAGGCGga-GCCGGUCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 59101 0.66 0.740276
Target:  5'- cGCCUCUCCGUCa---CCAuGCCAGgggAGg -3'
miRNA:   3'- -CGGAGAGGCGGagccGGU-CGGUCa--UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.