miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 3' -60.5 NC_006146.1 + 26023 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 16790 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 13712 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 19868 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 29101 0.7 0.525957
Target:  5'- gGCCUCUCgGguCCaccaGGCCGGCCGGaGGg -3'
miRNA:   3'- -CGGAGAGgC--GGag--CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 47878 0.69 0.535496
Target:  5'- aCCUgggCCGCCUCGGCCucGGUCAGc-- -3'
miRNA:   3'- cGGAga-GGCGGAGCCGG--UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 117586 0.69 0.545096
Target:  5'- gGCCUcCUCgGgCUCGGacuCCGGCCAGggagAGg -3'
miRNA:   3'- -CGGA-GAGgCgGAGCC---GGUCGGUCa---UC- -5'
28769 3' -60.5 NC_006146.1 + 115428 0.69 0.564455
Target:  5'- gGCCUCguucUCGCCcgCGGCCaucgAGCgGGUGGc -3'
miRNA:   3'- -CGGAGa---GGCGGa-GCCGG----UCGgUCAUC- -5'
28769 3' -60.5 NC_006146.1 + 28815 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 104104 0.69 0.583989
Target:  5'- cGCCUCaugcgCCGCCUgGGCCcgguGuCCAGg-- -3'
miRNA:   3'- -CGGAGa----GGCGGAgCCGGu---C-GGUCauc -5'
28769 3' -60.5 NC_006146.1 + 13425 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 16503 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 19581 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 22659 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 25737 0.69 0.583989
Target:  5'- uGCCUCcCCGggucCCa-GGCCAGCCGGaGGg -3'
miRNA:   3'- -CGGAGaGGC----GGagCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 117159 0.68 0.593809
Target:  5'- cGCCcgUCUUCGCCcCGGCgCAGCCGc--- -3'
miRNA:   3'- -CGG--AGAGGCGGaGCCG-GUCGGUcauc -5'
28769 3' -60.5 NC_006146.1 + 78941 0.68 0.593809
Target:  5'- uGCCUCcCCaGgCUCcuaaaaggggcaGGCCuGCCAGUAGa -3'
miRNA:   3'- -CGGAGaGG-CgGAG------------CCGGuCGGUCAUC- -5'
28769 3' -60.5 NC_006146.1 + 47479 0.68 0.613518
Target:  5'- aGCCUCUucagcUCGCCgaucuggucuUCGGCCgccgcGGCCAGUu- -3'
miRNA:   3'- -CGGAGA-----GGCGG----------AGCCGG-----UCGGUCAuc -5'
28769 3' -60.5 NC_006146.1 + 161003 0.68 0.623396
Target:  5'- cGCCUC-CUGCCU-GGCCGucaccGCCuuuGUGGg -3'
miRNA:   3'- -CGGAGaGGCGGAgCCGGU-----CGGu--CAUC- -5'
28769 3' -60.5 NC_006146.1 + 115099 0.68 0.63328
Target:  5'- gGCCUCUuccaCCGCCccgagucgcUGGCCAGCgUGGUGGc -3'
miRNA:   3'- -CGGAGA----GGCGGa--------GCCGGUCG-GUCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.