miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 5' -51.3 NC_006146.1 + 92014 0.68 0.983662
Target:  5'- gGGCUgcugCUGGGGGGcGGGCCcGGccuGGGGc -3'
miRNA:   3'- -CCGAa---GAUUUCUCuCUCGG-CCu--CUCC- -5'
28769 5' -51.3 NC_006146.1 + 92103 0.68 0.983662
Target:  5'- gGGCUgcugCUGGGGGGcGGGCCcGGccuGGGGc -3'
miRNA:   3'- -CCGAa---GAUUUCUCuCUCGG-CCu--CUCC- -5'
28769 5' -51.3 NC_006146.1 + 92163 0.68 0.983662
Target:  5'- gGGCUgcugCUGGGGGGcGGGCCcGGccuGGGGc -3'
miRNA:   3'- -CCGAa---GAUUUCUCuCUCGG-CCu--CUCC- -5'
28769 5' -51.3 NC_006146.1 + 92313 0.68 0.983662
Target:  5'- gGGCUgcugCUGGGGGGcGGGCCcGGccuGGGGc -3'
miRNA:   3'- -CCGAa---GAUUUCUCuCUCGG-CCu--CUCC- -5'
28769 5' -51.3 NC_006146.1 + 34011 0.68 0.981672
Target:  5'- aGGC----AGGGGGGGGGUCGGGGcAGGc -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCGGCCUC-UCC- -5'
28769 5' -51.3 NC_006146.1 + 57331 0.68 0.981672
Target:  5'- uGGCUcUCUGGGGGcGGGGCCccgggugucGGuGAGGg -3'
miRNA:   3'- -CCGA-AGAUUUCUcUCUCGG---------CCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 127726 0.68 0.981672
Target:  5'- aGGag-CUGAuGGGGcuGGGCCGGAGAGc -3'
miRNA:   3'- -CCgaaGAUUuCUCU--CUCGGCCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 48001 0.68 0.981672
Target:  5'- uGGCUggUGgcGGGAGgcuuGGCgGGGGAGGc -3'
miRNA:   3'- -CCGAagAUuuCUCUC----UCGgCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 86463 0.68 0.979505
Target:  5'- gGGCUUU--GAGGGGGcAGCCuGGGcuuuGAGGg -3'
miRNA:   3'- -CCGAAGauUUCUCUC-UCGG-CCU----CUCC- -5'
28769 5' -51.3 NC_006146.1 + 60113 0.68 0.977154
Target:  5'- uGGCgUUCUGugcaaGGGGCCGgGGGAGGg -3'
miRNA:   3'- -CCG-AAGAUuucucUCUCGGC-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 112491 0.68 0.97461
Target:  5'- cGGCgcgCUcauAGAGAuagcgguccagGGGCCGGuGGAGGg -3'
miRNA:   3'- -CCGaa-GAuu-UCUCU-----------CUCGGCC-UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 123431 0.68 0.97461
Target:  5'- cGGCgagCUGAAGAGgcuccuGGAGCUcGAGAGc -3'
miRNA:   3'- -CCGaa-GAUUUCUC------UCUCGGcCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 41316 0.68 0.973537
Target:  5'- gGGCUUUUucAGAGGGAGCUGucccuucaccaccAGGGGg -3'
miRNA:   3'- -CCGAAGAuuUCUCUCUCGGCc------------UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 2 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 98 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 130 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 997 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 1930 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 2862 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 34 0.69 0.971866
Target:  5'- gGGCUUCguuacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.