miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 5' -51.3 NC_006146.1 + 167390 0.67 0.991266
Target:  5'- gGGCUcCcGAGGGcGGGGCCGGGGccuggcGGGg -3'
miRNA:   3'- -CCGAaGaUUUCUcUCUCGGCCUC------UCC- -5'
28769 5' -51.3 NC_006146.1 + 81657 0.67 0.991266
Target:  5'- gGGCUc----GGAGGGuGCCGGGGAa- -3'
miRNA:   3'- -CCGAagauuUCUCUCuCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 15284 0.67 0.991266
Target:  5'- cGGCUgaaccggagCgagGGGGAGgaGGGGCCGGAGGc- -3'
miRNA:   3'- -CCGAa--------Ga--UUUCUC--UCUCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 170072 0.67 0.991266
Target:  5'- gGGCcgCgcguGGGGAuGGCCGGcgGGAGGg -3'
miRNA:   3'- -CCGaaGauu-UCUCUcUCGGCC--UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 117234 0.67 0.988659
Target:  5'- gGGCUUCcuggAAAGcGGccGGGGCCaGGGGGGu -3'
miRNA:   3'- -CCGAAGa---UUUC-UC--UCUCGGcCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 153736 0.67 0.988659
Target:  5'- gGGC--CUGGGGu---GGCCGGGGAGGg -3'
miRNA:   3'- -CCGaaGAUUUCucucUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 147581 0.67 0.988659
Target:  5'- gGGC--CUGGGGu---GGCCGGGGAGGg -3'
miRNA:   3'- -CCGaaGAUUUCucucUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 150659 0.67 0.988659
Target:  5'- gGGC--CUGGGGu---GGCCGGGGAGGg -3'
miRNA:   3'- -CCGaaGAUUUCucucUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 144503 0.67 0.988659
Target:  5'- gGGC--CUGGGGu---GGCCGGGGAGGg -3'
miRNA:   3'- -CCGaaGAUUUCucucUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 141425 0.67 0.988659
Target:  5'- gGGC--CUGGGGu---GGCCGGGGAGGg -3'
miRNA:   3'- -CCGaaGAUUUCucucUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 96104 0.67 0.988659
Target:  5'- aGGUUUCUAAGG-GuGAGUgGGGGuucuGGu -3'
miRNA:   3'- -CCGAAGAUUUCuCuCUCGgCCUCu---CC- -5'
28769 5' -51.3 NC_006146.1 + 156814 0.67 0.988659
Target:  5'- gGGC--CUGGGGu---GGCCGGGGAGGg -3'
miRNA:   3'- -CCGaaGAUUUCucucUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 43942 0.67 0.988072
Target:  5'- gGGCggggUCUAuccagacgcgcccGGAGAGcgccauccugccAGCgGGAGAGGa -3'
miRNA:   3'- -CCGa---AGAUu------------UCUCUC------------UCGgCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 165735 0.67 0.987147
Target:  5'- ------aGAAGAGAGAGCgGGGGucAGGg -3'
miRNA:   3'- ccgaagaUUUCUCUCUCGgCCUC--UCC- -5'
28769 5' -51.3 NC_006146.1 + 114186 0.67 0.986664
Target:  5'- cGGCccccu--GAGAaauauuuagacgccGGGCCGGAGGGGg -3'
miRNA:   3'- -CCGaagauuuCUCU--------------CUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 130687 0.67 0.985658
Target:  5'- gGGCcccUCgcgugccaacaagagAAAGAGAGAGCCcGAGgAGGa -3'
miRNA:   3'- -CCGa--AGa--------------UUUCUCUCUCGGcCUC-UCC- -5'
28769 5' -51.3 NC_006146.1 + 139348 0.67 0.985484
Target:  5'- uGGUgaugUUAGGGGcGGcGCCGGGGGGGg -3'
miRNA:   3'- -CCGaa--GAUUUCUcUCuCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 135998 0.67 0.985484
Target:  5'- aGGCaacCguaagGGAGGGGGGGuaGGGGGGGg -3'
miRNA:   3'- -CCGaa-Ga----UUUCUCUCUCggCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 32168 0.68 0.983662
Target:  5'- aGGCaacCguaagGAGGGGGGGGuaGGGGGGGg -3'
miRNA:   3'- -CCGaa-Ga----UUUCUCUCUCggCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 92014 0.68 0.983662
Target:  5'- gGGCUgcugCUGGGGGGcGGGCCcGGccuGGGGc -3'
miRNA:   3'- -CCGAa---GAUUUCUCuCUCGG-CCu--CUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.