miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 5' -51.3 NC_006146.1 + 65649 0.72 0.868133
Target:  5'- cGGCUcUCUGguGGGAGAGAGaaaaGGGGAGa -3'
miRNA:   3'- -CCGA-AGAU--UUCUCUCUCgg--CCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 18970 0.72 0.882826
Target:  5'- cGGCccCUAGAGAGggcggcAGGGCCGGAGccagaccccaguGGGg -3'
miRNA:   3'- -CCGaaGAUUUCUC------UCUCGGCCUC------------UCC- -5'
28769 5' -51.3 NC_006146.1 + 77832 0.72 0.889829
Target:  5'- cGGCg---GAGGGGGGGGCgGGGGGGu -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCGgCCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 170105 0.71 0.903125
Target:  5'- cGGCgcCgc-AGGGGGGGCCGGcGGGGc -3'
miRNA:   3'- -CCGaaGauuUCUCUCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 46218 0.71 0.903125
Target:  5'- aGGCUUCcu-GGAGGaaaauGaAGCCGGAGGGa -3'
miRNA:   3'- -CCGAAGauuUCUCU-----C-UCGGCCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 85132 0.71 0.909412
Target:  5'- gGGCcUCU---GGGAuGGCCGGGGGGGu -3'
miRNA:   3'- -CCGaAGAuuuCUCUcUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 115016 0.71 0.909412
Target:  5'- aGCUggUGGAGcGGGGAGCagGGGGAGGg -3'
miRNA:   3'- cCGAagAUUUC-UCUCUCGg-CCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 45394 0.71 0.909412
Target:  5'- uGUUUCUGGAGGGGGcuCCGGGGGuuGGa -3'
miRNA:   3'- cCGAAGAUUUCUCUCucGGCCUCU--CC- -5'
28769 5' -51.3 NC_006146.1 + 44626 0.71 0.915453
Target:  5'- uGGCca-UGGGGuG-GAGCUGGAGAGGc -3'
miRNA:   3'- -CCGaagAUUUCuCuCUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 52003 0.7 0.932096
Target:  5'- cGUUUCggacGAGAGAGAGC--GAGAGGg -3'
miRNA:   3'- cCGAAGau--UUCUCUCUCGgcCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 44761 0.7 0.937147
Target:  5'- gGGCUcUCgggGGAGAGGGugccguGCCGGgcucAGGGGg -3'
miRNA:   3'- -CCGA-AGa--UUUCUCUCu-----CGGCC----UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 105848 0.7 0.95083
Target:  5'- aGGCg-CUGccAAGAGcucgaGGaAGCCGGGGAGGc -3'
miRNA:   3'- -CCGaaGAU--UUCUC-----UC-UCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 90225 0.7 0.95083
Target:  5'- aGGCggugGAGGAGGcAGCCgagGGAGAGGc -3'
miRNA:   3'- -CCGaagaUUUCUCUcUCGG---CCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 108575 0.69 0.954511
Target:  5'- aGGCgagCUGAcGGcacccccGGGGAGCCGGAGAu- -3'
miRNA:   3'- -CCGaa-GAUU-UC-------UCUCUCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 43755 0.69 0.954908
Target:  5'- cGGCggacagaGAGGAGuGGGCCGcAGAGGg -3'
miRNA:   3'- -CCGaaga---UUUCUCuCUCGGCcUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 166869 0.69 0.958751
Target:  5'- cGGCgg--GAGGGGGGAGCggaGGGcGAGGa -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCGg--CCU-CUCC- -5'
28769 5' -51.3 NC_006146.1 + 40995 0.69 0.958751
Target:  5'- uGGCccugUCUggucagggcGAAGAGccgggcgucAGAGCCGuGGGAGGa -3'
miRNA:   3'- -CCGa---AGA---------UUUCUC---------UCUCGGC-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 42290 0.69 0.958751
Target:  5'- uGGCggggagGAGGAGcgGGAGCCGGAgugcccugcGAGGu -3'
miRNA:   3'- -CCGaaga--UUUCUC--UCUCGGCCU---------CUCC- -5'
28769 5' -51.3 NC_006146.1 + 3365 0.69 0.962363
Target:  5'- uGGCcUCccAGGAGAgGGGCCGGGGGc- -3'
miRNA:   3'- -CCGaAGauUUCUCU-CUCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 2433 0.69 0.962363
Target:  5'- uGGCcUCccAGGAGAgGGGCCGGGGGc- -3'
miRNA:   3'- -CCGaAGauUUCUCU-CUCGGCCUCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.