miRNA display CGI


Results 21 - 40 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 5' -51.3 NC_006146.1 + 147881 0.75 0.734049
Target:  5'- gGGCc---GGGGAGGGAGgCGGGGAGGa -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 150814 0.75 0.734049
Target:  5'- gGGCcUCggGGAGGGAGAGa-GGAGGGGg -3'
miRNA:   3'- -CCGaAGa-UUUCUCUCUCggCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 153892 0.75 0.734049
Target:  5'- gGGCcUCggGGAGGGAGAGa-GGAGGGGg -3'
miRNA:   3'- -CCGaAGa-UUUCUCUCUCggCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 157115 0.75 0.734049
Target:  5'- gGGCc---GGGGAGGGAGgCGGGGAGGa -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 156970 0.75 0.734049
Target:  5'- gGGCcUCggGGAGGGAGAGa-GGAGGGGg -3'
miRNA:   3'- -CCGaAGa-UUUCUCUCUCggCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 33197 0.75 0.743983
Target:  5'- gGGCacccCcGGGGGGAG-GCCGGAGGGGg -3'
miRNA:   3'- -CCGaa--GaUUUCUCUCuCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 120207 0.75 0.753815
Target:  5'- cGGCcUCUAAcAGGGaAGuGCCGGAGGGa -3'
miRNA:   3'- -CCGaAGAUU-UCUC-UCuCGGCCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 163198 0.75 0.753815
Target:  5'- uGGCUUCUGccccucAGAG-GAGCCGGGcAGGc -3'
miRNA:   3'- -CCGAAGAUu-----UCUCuCUCGGCCUcUCC- -5'
28769 5' -51.3 NC_006146.1 + 68612 0.75 0.773136
Target:  5'- uGGCagUUgagGAAGGGAGGGCUGGcGGGGa -3'
miRNA:   3'- -CCGa-AGa--UUUCUCUCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 142995 0.74 0.782605
Target:  5'- aGGCagg-GAGGAGAGgaGGCCGGGGAGcGg -3'
miRNA:   3'- -CCGaagaUUUCUCUC--UCGGCCUCUC-C- -5'
28769 5' -51.3 NC_006146.1 + 146073 0.74 0.782605
Target:  5'- aGGCagg-GAGGAGAGgaGGCCGGGGAGcGg -3'
miRNA:   3'- -CCGaagaUUUCUCUC--UCGGCCUCUC-C- -5'
28769 5' -51.3 NC_006146.1 + 155307 0.74 0.782605
Target:  5'- aGGCagg-GAGGAGAGgaGGCCGGGGAGcGg -3'
miRNA:   3'- -CCGaagaUUUCUCUC--UCGGCCUCUC-C- -5'
28769 5' -51.3 NC_006146.1 + 158386 0.74 0.782605
Target:  5'- aGGCagg-GAGGAGAGgaGGCCGGGGAGcGg -3'
miRNA:   3'- -CCGaagaUUUCUCUC--UCGGCCUCUC-C- -5'
28769 5' -51.3 NC_006146.1 + 152229 0.74 0.782605
Target:  5'- aGGCagg-GAGGAGAGgaGGCCGGGGAGcGg -3'
miRNA:   3'- -CCGaagaUUUCUCUC--UCGGCCUCUC-C- -5'
28769 5' -51.3 NC_006146.1 + 51155 0.74 0.782605
Target:  5'- cGCUguagCUGucGGAGugggcuguGGAGCCGGGGAGGc -3'
miRNA:   3'- cCGAa---GAUu-UCUC--------UCUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 149151 0.74 0.782605
Target:  5'- aGGCagg-GAGGAGAGgaGGCCGGGGAGcGg -3'
miRNA:   3'- -CCGaagaUUUCUCUC--UCGGCCUCUC-C- -5'
28769 5' -51.3 NC_006146.1 + 139217 0.74 0.813698
Target:  5'- aGGUUUCUAGGG-GuGAGCUgcuguggggcuuguuGGAGAGGa -3'
miRNA:   3'- -CCGAAGAUUUCuCuCUCGG---------------CCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 26167 0.73 0.85176
Target:  5'- gGGCUUaagcggcCUGGAGGGGauuaGGUCGGAGGGGg -3'
miRNA:   3'- -CCGAA-------GAUUUCUCUc---UCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 126023 0.73 0.85256
Target:  5'- gGGCUUCUGcuGcu-GGGCCGG-GAGGg -3'
miRNA:   3'- -CCGAAGAUuuCucuCUCGGCCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 135328 0.72 0.867375
Target:  5'- uGGC-UCUGAGGGGAGGcacgggcGCCuaauuucuaGGAGGGGg -3'
miRNA:   3'- -CCGaAGAUUUCUCUCU-------CGG---------CCUCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.