Results 21 - 40 of 146 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 127726 | 0.68 | 0.981672 |
Target: 5'- aGGag-CUGAuGGGGcuGGGCCGGAGAGc -3' miRNA: 3'- -CCgaaGAUUuCUCU--CUCGGCCUCUCc -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 60113 | 0.68 | 0.977154 |
Target: 5'- uGGCgUUCUGugcaaGGGGCCGgGGGAGGg -3' miRNA: 3'- -CCG-AAGAUuucucUCUCGGC-CUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 52003 | 0.7 | 0.932096 |
Target: 5'- cGUUUCggacGAGAGAGAGC--GAGAGGg -3' miRNA: 3'- cCGAAGau--UUCUCUCUCGgcCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 163198 | 0.75 | 0.753815 |
Target: 5'- uGGCUUCUGccccucAGAG-GAGCCGGGcAGGc -3' miRNA: 3'- -CCGAAGAUu-----UCUCuCUCGGCCUcUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 170185 | 0.67 | 0.991266 |
Target: 5'- gGGCUcCcGAGGGcGGGGCCGGGGccuggcGGGg -3' miRNA: 3'- -CCGAaGaUUUCUcUCUCGGCCUC------UCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 167276 | 0.67 | 0.991266 |
Target: 5'- gGGCcgCgcguGGGGAuGGCCGGcgGGAGGg -3' miRNA: 3'- -CCGaaGauu-UCUCUcUCGGCC--UCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 2041 | 0.69 | 0.962363 |
Target: 5'- aGGCcUCagcgccAAGAGAGGGCCcGAGAGu -3' miRNA: 3'- -CCGaAGau----UUCUCUCUCGGcCUCUCc -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 169173 | 0.77 | 0.620824 |
Target: 5'- cGGCgcCUGcAGGGGGGGCCGGcGGGGc -3' miRNA: 3'- -CCGaaGAUuUCUCUCUCGGCCuCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 117234 | 0.67 | 0.988659 |
Target: 5'- gGGCUUCcuggAAAGcGGccGGGGCCaGGGGGGu -3' miRNA: 3'- -CCGAAGa---UUUC-UC--UCUCGGcCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 168241 | 0.77 | 0.620824 |
Target: 5'- cGGCgcCUGcAGGGGGGGCCGGcGGGGc -3' miRNA: 3'- -CCGaaGAUuUCUCUCUCGGCCuCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 118972 | 0.69 | 0.965748 |
Target: 5'- aGGCcaugUCUcacgguAAGGAG-GAGCUGGGGGGa -3' miRNA: 3'- -CCGa---AGA------UUUCUCuCUCGGCCUCUCc -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 48001 | 0.68 | 0.981672 |
Target: 5'- uGGCUggUGgcGGGAGgcuuGGCgGGGGAGGc -3' miRNA: 3'- -CCGAagAUuuCUCUC----UCGgCCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 40995 | 0.69 | 0.958751 |
Target: 5'- uGGCccugUCUggucagggcGAAGAGccgggcgucAGAGCCGuGGGAGGa -3' miRNA: 3'- -CCGa---AGA---------UUUCUC---------UCUCGGC-CUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 90225 | 0.7 | 0.95083 |
Target: 5'- aGGCggugGAGGAGGcAGCCgagGGAGAGGc -3' miRNA: 3'- -CCGaagaUUUCUCUcUCGG---CCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 46218 | 0.71 | 0.903125 |
Target: 5'- aGGCUUCcu-GGAGGaaaauGaAGCCGGAGGGa -3' miRNA: 3'- -CCGAAGauuUCUCU-----C-UCGGCCUCUCc -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 51155 | 0.74 | 0.782605 |
Target: 5'- cGCUguagCUGucGGAGugggcuguGGAGCCGGGGAGGc -3' miRNA: 3'- cCGAa---GAUu-UCUC--------UCUCGGCCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 149584 | 0.66 | 0.993375 |
Target: 5'- ---cUCUugGAAGGGGcGGCgGGAGAGGa -3' miRNA: 3'- ccgaAGA--UUUCUCUcUCGgCCUCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 90054 | 0.66 | 0.992378 |
Target: 5'- aGGUggugCU--GGAGGGAGCCuaGGAGGcGGu -3' miRNA: 3'- -CCGaa--GAuuUCUCUCUCGG--CCUCU-CC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 169140 | 0.67 | 0.991266 |
Target: 5'- gGGCcgCgcguGGGGAuGGCCGGcgGGAGGg -3' miRNA: 3'- -CCGaaGauu-UCUCUcUCGGCC--UCUCC- -5' |
|||||||
28769 | 5' | -51.3 | NC_006146.1 | + | 167390 | 0.67 | 0.991266 |
Target: 5'- gGGCUcCcGAGGGcGGGGCCGGGGccuggcGGGg -3' miRNA: 3'- -CCGAaGaUUUCUcUCUCGGCCUC------UCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home