miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 5' -51.3 NC_006146.1 + 34225 0.66 0.992791
Target:  5'- cGCUUCaUGGGGGGGGAggccgccgcaaggacGCCGGGccggcuGGGGg -3'
miRNA:   3'- cCGAAG-AUUUCUCUCU---------------CGGCCU------CUCC- -5'
28769 5' -51.3 NC_006146.1 + 36212 0.69 0.965748
Target:  5'- gGGCUcCccGGGAGcgcaAGccGGCCGGGGAGGa -3'
miRNA:   3'- -CCGAaGauUUCUC----UC--UCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 40870 0.66 0.994265
Target:  5'- cGGCUcgcggUCcGGAGAcGGAGCCGGGGc-- -3'
miRNA:   3'- -CCGA-----AGaUUUCUcUCUCGGCCUCucc -5'
28769 5' -51.3 NC_006146.1 + 40995 0.69 0.958751
Target:  5'- uGGCccugUCUggucagggcGAAGAGccgggcgucAGAGCCGuGGGAGGa -3'
miRNA:   3'- -CCGa---AGA---------UUUCUC---------UCUCGGC-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 41316 0.68 0.973537
Target:  5'- gGGCUUUUucAGAGGGAGCUGucccuucaccaccAGGGGg -3'
miRNA:   3'- -CCGAAGAuuUCUCUCUCGGCc------------UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 42290 0.69 0.958751
Target:  5'- uGGCggggagGAGGAGcgGGAGCCGGAgugcccugcGAGGu -3'
miRNA:   3'- -CCGaaga--UUUCUC--UCUCGGCCU---------CUCC- -5'
28769 5' -51.3 NC_006146.1 + 43755 0.69 0.954908
Target:  5'- cGGCggacagaGAGGAGuGGGCCGcAGAGGg -3'
miRNA:   3'- -CCGaaga---UUUCUCuCUCGGCcUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 43942 0.67 0.988072
Target:  5'- gGGCggggUCUAuccagacgcgcccGGAGAGcgccauccugccAGCgGGAGAGGa -3'
miRNA:   3'- -CCGa---AGAUu------------UCUCUC------------UCGgCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 44626 0.71 0.915453
Target:  5'- uGGCca-UGGGGuG-GAGCUGGAGAGGc -3'
miRNA:   3'- -CCGaagAUUUCuCuCUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 44761 0.7 0.937147
Target:  5'- gGGCUcUCgggGGAGAGGGugccguGCCGGgcucAGGGGg -3'
miRNA:   3'- -CCGA-AGa--UUUCUCUCu-----CGGCC----UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 45056 0.66 0.993375
Target:  5'- cGGCUccCUAGGGGcggcuGAGGuGCCucguggGGAGAGGg -3'
miRNA:   3'- -CCGAa-GAUUUCU-----CUCU-CGG------CCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 45394 0.71 0.909412
Target:  5'- uGUUUCUGGAGGGGGcuCCGGGGGuuGGa -3'
miRNA:   3'- cCGAAGAUUUCUCUCucGGCCUCU--CC- -5'
28769 5' -51.3 NC_006146.1 + 46218 0.71 0.903125
Target:  5'- aGGCUUCcu-GGAGGaaaauGaAGCCGGAGGGa -3'
miRNA:   3'- -CCGAAGauuUCUCU-----C-UCGGCCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 48001 0.68 0.981672
Target:  5'- uGGCUggUGgcGGGAGgcuuGGCgGGGGAGGc -3'
miRNA:   3'- -CCGAagAUuuCUCUC----UCGgCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 51155 0.74 0.782605
Target:  5'- cGCUguagCUGucGGAGugggcuguGGAGCCGGGGAGGc -3'
miRNA:   3'- cCGAa---GAUu-UCUC--------UCUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 52003 0.7 0.932096
Target:  5'- cGUUUCggacGAGAGAGAGC--GAGAGGg -3'
miRNA:   3'- cCGAAGau--UUCUCUCUCGgcCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 57331 0.68 0.981672
Target:  5'- uGGCUcUCUGGGGGcGGGGCCccgggugucGGuGAGGg -3'
miRNA:   3'- -CCGA-AGAUUUCUcUCUCGG---------CCuCUCC- -5'
28769 5' -51.3 NC_006146.1 + 60113 0.68 0.977154
Target:  5'- uGGCgUUCUGugcaaGGGGCCGgGGGAGGg -3'
miRNA:   3'- -CCG-AAGAUuucucUCUCGGC-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 65649 0.72 0.868133
Target:  5'- cGGCUcUCUGguGGGAGAGAGaaaaGGGGAGa -3'
miRNA:   3'- -CCGA-AGAU--UUCUCUCUCgg--CCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 68612 0.75 0.773136
Target:  5'- uGGCagUUgagGAAGGGAGGGCUGGcGGGGa -3'
miRNA:   3'- -CCGa-AGa--UUUCUCUCUCGGCCuCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.