miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 5' -51.3 NC_006146.1 + 149178 0.66 0.995755
Target:  5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3'
miRNA:   3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5'
28769 5' -51.3 NC_006146.1 + 146100 0.66 0.995755
Target:  5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3'
miRNA:   3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5'
28769 5' -51.3 NC_006146.1 + 143022 0.66 0.995755
Target:  5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3'
miRNA:   3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5'
28769 5' -51.3 NC_006146.1 + 123052 0.66 0.995755
Target:  5'- gGGCgcugGAGGAGAGGGUCcucGAGAGc -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCGGc--CUCUCc -5'
28769 5' -51.3 NC_006146.1 + 157296 0.66 0.995055
Target:  5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3'
miRNA:   3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 156687 0.66 0.995055
Target:  5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3'
miRNA:   3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 154218 0.66 0.995055
Target:  5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3'
miRNA:   3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 144984 0.66 0.995055
Target:  5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3'
miRNA:   3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 147454 0.66 0.995055
Target:  5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3'
miRNA:   3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 148062 0.66 0.995055
Target:  5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3'
miRNA:   3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 150532 0.66 0.995055
Target:  5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3'
miRNA:   3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 158413 0.66 0.995755
Target:  5'- nGGCUgggauGGGGA-AGCCGGAguccaGAGGg -3'
miRNA:   3'- -CCGAagauuUCUCUcUCGGCCU-----CUCC- -5'
28769 5' -51.3 NC_006146.1 + 151140 0.66 0.995055
Target:  5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3'
miRNA:   3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 153610 0.66 0.995055
Target:  5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3'
miRNA:   3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 139348 0.67 0.985484
Target:  5'- uGGUgaugUUAGGGGcGGcGCCGGGGGGGg -3'
miRNA:   3'- -CCGaa--GAUUUCUcUCuCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 135998 0.67 0.985484
Target:  5'- aGGCaacCguaagGGAGGGGGGGuaGGGGGGGg -3'
miRNA:   3'- -CCGaa-Ga----UUUCUCUCUCggCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 114186 0.67 0.986664
Target:  5'- cGGCccccu--GAGAaauauuuagacgccGGGCCGGAGGGGg -3'
miRNA:   3'- -CCGaagauuuCUCU--------------CUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 150659 0.67 0.988659
Target:  5'- gGGC--CUGGGGu---GGCCGGGGAGGg -3'
miRNA:   3'- -CCGaaGAUUUCucucUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 15284 0.67 0.991266
Target:  5'- cGGCUgaaccggagCgagGGGGAGgaGGGGCCGGAGGc- -3'
miRNA:   3'- -CCGAa--------Ga--UUUCUC--UCUCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 156814 0.67 0.988659
Target:  5'- gGGC--CUGGGGu---GGCCGGGGAGGg -3'
miRNA:   3'- -CCGaaGAUUUCucucUCGGCCUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.