miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 5' -51.3 NC_006146.1 + 46218 0.71 0.903125
Target:  5'- aGGCUUCcu-GGAGGaaaauGaAGCCGGAGGGa -3'
miRNA:   3'- -CCGAAGauuUCUCU-----C-UCGGCCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 51155 0.74 0.782605
Target:  5'- cGCUguagCUGucGGAGugggcuguGGAGCCGGGGAGGc -3'
miRNA:   3'- cCGAa---GAUu-UCUC--------UCUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 997 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 130 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 98 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 34 0.69 0.971866
Target:  5'- gGGCUUCguuacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 2 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 117595 0.69 0.965748
Target:  5'- gGGCUcggacUCcGGccAGGGAGAGgaGGAGAGGu -3'
miRNA:   3'- -CCGA-----AGaUU--UCUCUCUCggCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 3365 0.69 0.962363
Target:  5'- uGGCcUCccAGGAGAgGGGCCGGGGGc- -3'
miRNA:   3'- -CCGaAGauUUCUCU-CUCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 36212 0.69 0.965748
Target:  5'- gGGCUcCccGGGAGcgcaAGccGGCCGGGGAGGa -3'
miRNA:   3'- -CCGAaGauUUCUC----UC--UCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 148062 0.66 0.995055
Target:  5'- gGGCgucucugggUCUGGAcuGGAGGGCCcuGGGAGGc -3'
miRNA:   3'- -CCGa--------AGAUUUc-UCUCUCGGc-CUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 1930 0.69 0.971866
Target:  5'- gGGCUUCgucacgcAAGGGuGAuuUCGGAGAGGg -3'
miRNA:   3'- -CCGAAGau-----UUCUCuCUc-GGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 149866 0.66 0.992378
Target:  5'- aGGC--CUGGGGccucGGAGGGCCuGGAGGGc -3'
miRNA:   3'- -CCGaaGAUUUC----UCUCUCGG-CCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 146788 0.66 0.992378
Target:  5'- aGGC--CUGGGGccucGGAGGGCCuGGAGGGc -3'
miRNA:   3'- -CCGaaGAUUUC----UCUCUCGG-CCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 81657 0.67 0.991266
Target:  5'- gGGCUc----GGAGGGuGCCGGGGAa- -3'
miRNA:   3'- -CCGAagauuUCUCUCuCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 156814 0.67 0.988659
Target:  5'- gGGC--CUGGGGu---GGCCGGGGAGGg -3'
miRNA:   3'- -CCGaaGAUUUCucucUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 15284 0.67 0.991266
Target:  5'- cGGCUgaaccggagCgagGGGGAGgaGGGGCCGGAGGc- -3'
miRNA:   3'- -CCGAa--------Ga--UUUCUC--UCUCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 123052 0.66 0.995755
Target:  5'- gGGCgcugGAGGAGAGGGUCcucGAGAGc -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCGGc--CUCUCc -5'
28769 5' -51.3 NC_006146.1 + 147454 0.66 0.995055
Target:  5'- gGGCggCUGGGGGucGGGCUGGccugccAGGGGg -3'
miRNA:   3'- -CCGaaGAUUUCUcuCUCGGCC------UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 153736 0.67 0.988659
Target:  5'- gGGC--CUGGGGu---GGCCGGGGAGGg -3'
miRNA:   3'- -CCGaaGAUUUCucucUCGGCCUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.