miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 5' -51.3 NC_006146.1 + 166124 0.66 0.994265
Target:  5'- ---aUCUAGgcAGGGAgGAGaCGGAGGGGg -3'
miRNA:   3'- ccgaAGAUU--UCUCU-CUCgGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 40870 0.66 0.994265
Target:  5'- cGGCUcgcggUCcGGAGAcGGAGCCGGGGc-- -3'
miRNA:   3'- -CCGA-----AGaUUUCUcUCUCGGCCUCucc -5'
28769 5' -51.3 NC_006146.1 + 140115 0.66 0.994265
Target:  5'- aGGUggugGAAGAGGGGGUggCGGAGGuGGu -3'
miRNA:   3'- -CCGaagaUUUCUCUCUCG--GCCUCU-CC- -5'
28769 5' -51.3 NC_006146.1 + 79116 0.66 0.993375
Target:  5'- gGGCUgagCUGcAG-GAaaucaagccauGGGUCGGGGAGGa -3'
miRNA:   3'- -CCGAa--GAUuUCuCU-----------CUCGGCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 45056 0.66 0.993375
Target:  5'- cGGCUccCUAGGGGcggcuGAGGuGCCucguggGGAGAGGg -3'
miRNA:   3'- -CCGAa-GAUUUCU-----CUCU-CGG------CCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 149584 0.66 0.993375
Target:  5'- ---cUCUugGAAGGGGcGGCgGGAGAGGa -3'
miRNA:   3'- ccgaAGA--UUUCUCUcUCGgCCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 138055 0.66 0.992791
Target:  5'- cGCUUCaUGGGGGGGGAggccgccgcaaggacGCCGGGccggcuGGGGg -3'
miRNA:   3'- cCGAAG-AUUUCUCUCU---------------CGGCCU------CUCC- -5'
28769 5' -51.3 NC_006146.1 + 34225 0.66 0.992791
Target:  5'- cGCUUCaUGGGGGGGGAggccgccgcaaggacGCCGGGccggcuGGGGg -3'
miRNA:   3'- cCGAAG-AUUUCUCUCU---------------CGGCCU------CUCC- -5'
28769 5' -51.3 NC_006146.1 + 90054 0.66 0.992378
Target:  5'- aGGUggugCU--GGAGGGAGCCuaGGAGGcGGu -3'
miRNA:   3'- -CCGaa--GAuuUCUCUCUCGG--CCUCU-CC- -5'
28769 5' -51.3 NC_006146.1 + 149866 0.66 0.992378
Target:  5'- aGGC--CUGGGGccucGGAGGGCCuGGAGGGc -3'
miRNA:   3'- -CCGaaGAUUUC----UCUCUCGG-CCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 139601 0.66 0.992378
Target:  5'- gGGCgag-GAGGAGAaggccuccaugGAGCCgaugGGGGAGGc -3'
miRNA:   3'- -CCGaagaUUUCUCU-----------CUCGG----CCUCUCC- -5'
28769 5' -51.3 NC_006146.1 + 156022 0.66 0.992378
Target:  5'- aGGC--CUGGGGccucGGAGGGCCuGGAGGGc -3'
miRNA:   3'- -CCGaaGAUUUC----UCUCUCGG-CCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 146788 0.66 0.992378
Target:  5'- aGGC--CUGGGGccucGGAGGGCCuGGAGGGc -3'
miRNA:   3'- -CCGaaGAUUUC----UCUCUCGG-CCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 152944 0.66 0.992378
Target:  5'- aGGC--CUGGGGccucGGAGGGCCuGGAGGGc -3'
miRNA:   3'- -CCGaaGAUUUC----UCUCUCGG-CCUCUCc -5'
28769 5' -51.3 NC_006146.1 + 168322 0.67 0.991266
Target:  5'- gGGCUcCcGAGGGcGGGGCCGGGGccuggcGGGg -3'
miRNA:   3'- -CCGAaGaUUUCUcUCUCGGCCUC------UCC- -5'
28769 5' -51.3 NC_006146.1 + 15284 0.67 0.991266
Target:  5'- cGGCUgaaccggagCgagGGGGAGgaGGGGCCGGAGGc- -3'
miRNA:   3'- -CCGAa--------Ga--UUUCUC--UCUCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 169254 0.67 0.991266
Target:  5'- gGGCUcCcGAGGGcGGGGCCGGGGccuggcGGGg -3'
miRNA:   3'- -CCGAaGaUUUCUcUCUCGGCCUC------UCC- -5'
28769 5' -51.3 NC_006146.1 + 169140 0.67 0.991266
Target:  5'- gGGCcgCgcguGGGGAuGGCCGGcgGGAGGg -3'
miRNA:   3'- -CCGaaGauu-UCUCUcUCGGCC--UCUCC- -5'
28769 5' -51.3 NC_006146.1 + 81657 0.67 0.991266
Target:  5'- gGGCUc----GGAGGGuGCCGGGGAa- -3'
miRNA:   3'- -CCGAagauuUCUCUCuCGGCCUCUcc -5'
28769 5' -51.3 NC_006146.1 + 170072 0.67 0.991266
Target:  5'- gGGCcgCgcguGGGGAuGGCCGGcgGGAGGg -3'
miRNA:   3'- -CCGaaGauu-UCUCUcUCGGCC--UCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.