miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28770 3' -55.5 NC_006146.1 + 129000 1.12 0.002049
Target:  5'- gGGGGGUCGCAGCUACUGCGCUGAAACa -3'
miRNA:   3'- -CCCCCAGCGUCGAUGACGCGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 127502 0.77 0.392916
Target:  5'- cGGGGGUCGCAGCcg--GgGCaGAGGCa -3'
miRNA:   3'- -CCCCCAGCGUCGaugaCgCGaCUUUG- -5'
28770 3' -55.5 NC_006146.1 + 115664 0.76 0.445673
Target:  5'- cGGGGGUCauGguGgaGCUGUaGCUGAGACc -3'
miRNA:   3'- -CCCCCAG--CguCgaUGACG-CGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 77942 0.74 0.521685
Target:  5'- cGGGGGUCGCuGUUugguCUGgGCcGGAGCc -3'
miRNA:   3'- -CCCCCAGCGuCGAu---GACgCGaCUUUG- -5'
28770 3' -55.5 NC_006146.1 + 61398 0.73 0.571663
Target:  5'- uGGGGGUUGUcccaGGCUgGCUGCGgUGGccAACg -3'
miRNA:   3'- -CCCCCAGCG----UCGA-UGACGCgACU--UUG- -5'
28770 3' -55.5 NC_006146.1 + 115511 0.73 0.591997
Target:  5'- uGGGGUCccggaGCAGCgugccAUUGCGCUGAGc- -3'
miRNA:   3'- cCCCCAG-----CGUCGa----UGACGCGACUUug -5'
28770 3' -55.5 NC_006146.1 + 114220 0.72 0.663701
Target:  5'- aGGGGGUaGCAGCccgGCgauccgGCGUUGcAGACg -3'
miRNA:   3'- -CCCCCAgCGUCGa--UGa-----CGCGAC-UUUG- -5'
28770 3' -55.5 NC_006146.1 + 33281 0.71 0.702277
Target:  5'- gGGGGGUgGCccGGCUgggcaccGCUGCGCcgccgcucgguccUGggGCu -3'
miRNA:   3'- -CCCCCAgCG--UCGA-------UGACGCG-------------ACuuUG- -5'
28770 3' -55.5 NC_006146.1 + 94999 0.71 0.704288
Target:  5'- uGGGGG--GCAGCUGaggagGUGCUGGAAUu -3'
miRNA:   3'- -CCCCCagCGUCGAUga---CGCGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 77888 0.7 0.772599
Target:  5'- aGGGGUCggaGCAcGCUGCUuaacagGCGCaGggGCg -3'
miRNA:   3'- cCCCCAG---CGU-CGAUGA------CGCGaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 154680 0.7 0.772599
Target:  5'- cGGGGGgCGCuGCUGCUGgGUggucuGCg -3'
miRNA:   3'- -CCCCCaGCGuCGAUGACgCGacuu-UG- -5'
28770 3' -55.5 NC_006146.1 + 56854 0.7 0.772599
Target:  5'- cGGGGG-CgGCAGCU-UUG-GCUGggGCu -3'
miRNA:   3'- -CCCCCaG-CGUCGAuGACgCGACuuUG- -5'
28770 3' -55.5 NC_006146.1 + 161748 0.69 0.794759
Target:  5'- cGGGGGUgGCGGCUgagguccgagggggcGcCUGgGCgGggGCc -3'
miRNA:   3'- -CCCCCAgCGUCGA---------------U-GACgCGaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 60714 0.69 0.800171
Target:  5'- uGGGGcCGCAuCUccaACcgGCGCUGAGGCc -3'
miRNA:   3'- cCCCCaGCGUcGA---UGa-CGCGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 60278 0.69 0.807301
Target:  5'- cGGGGagcgggaguuugCGgAGCUGCUGaGCUGGGACc -3'
miRNA:   3'- cCCCCa-----------GCgUCGAUGACgCGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 66718 0.69 0.809068
Target:  5'- uGGGGG-CGCAGaCggccCUGCGaCUGGAucuGCa -3'
miRNA:   3'- -CCCCCaGCGUC-Gau--GACGC-GACUU---UG- -5'
28770 3' -55.5 NC_006146.1 + 34019 0.69 0.817803
Target:  5'- gGGGGGUCGgGGCagGCggGCGUggucccGggGCc -3'
miRNA:   3'- -CCCCCAGCgUCGa-UGa-CGCGa-----CuuUG- -5'
28770 3' -55.5 NC_006146.1 + 99598 0.68 0.834757
Target:  5'- uGGGGcCGCGGUgcuCUGCGUagcacGAGGCg -3'
miRNA:   3'- cCCCCaGCGUCGau-GACGCGa----CUUUG- -5'
28770 3' -55.5 NC_006146.1 + 123001 0.68 0.842961
Target:  5'- cGGGGGacuucuucUCGgAGCUGCUGaccgagGCcGAGGCg -3'
miRNA:   3'- -CCCCC--------AGCgUCGAUGACg-----CGaCUUUG- -5'
28770 3' -55.5 NC_006146.1 + 88241 0.68 0.842961
Target:  5'- cGGGGGUCGguGgUAC-GgGCUGu--- -3'
miRNA:   3'- -CCCCCAGCguCgAUGaCgCGACuuug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.