miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28770 3' -55.5 NC_006146.1 + 8302 0.67 0.9074
Target:  5'- cGGGGUCGCu-CU-CUGUGCUGuuagGGCc -3'
miRNA:   3'- cCCCCAGCGucGAuGACGCGACu---UUG- -5'
28770 3' -55.5 NC_006146.1 + 9627 0.67 0.887913
Target:  5'- uGGGGGUguaaggcacgCGUGGaUGCcGCGUUGGGACg -3'
miRNA:   3'- -CCCCCA----------GCGUCgAUGaCGCGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 18881 0.67 0.901137
Target:  5'- cGGGGGcCuCAGCccccACUGUGCUucuaccGAGACa -3'
miRNA:   3'- -CCCCCaGcGUCGa---UGACGCGA------CUUUG- -5'
28770 3' -55.5 NC_006146.1 + 24844 0.67 0.901137
Target:  5'- -cGGGUCaccaacaaGCAGgUGCUGCaGCUGGAcGCg -3'
miRNA:   3'- ccCCCAG--------CGUCgAUGACG-CGACUU-UG- -5'
28770 3' -55.5 NC_006146.1 + 33281 0.71 0.702277
Target:  5'- gGGGGGUgGCccGGCUgggcaccGCUGCGCcgccgcucgguccUGggGCu -3'
miRNA:   3'- -CCCCCAgCG--UCGA-------UGACGCG-------------ACuuUG- -5'
28770 3' -55.5 NC_006146.1 + 33403 0.67 0.899857
Target:  5'- gGGGGGUgGCccgccugGGCaccGCUGCGCcgccgcucgguccUGggGCu -3'
miRNA:   3'- -CCCCCAgCG-------UCGa--UGACGCG-------------ACuuUG- -5'
28770 3' -55.5 NC_006146.1 + 33573 0.67 0.901137
Target:  5'- cGGGGGUCGCcGCguu--CGCUGGu-- -3'
miRNA:   3'- -CCCCCAGCGuCGaugacGCGACUuug -5'
28770 3' -55.5 NC_006146.1 + 34019 0.69 0.817803
Target:  5'- gGGGGGUCGgGGCagGCggGCGUggucccGggGCc -3'
miRNA:   3'- -CCCCCAGCgUCGa-UGa-CGCGa-----CuuUG- -5'
28770 3' -55.5 NC_006146.1 + 38774 0.67 0.887913
Target:  5'- aGGGGGUCGCAGaacaaGUGCuugUGGAAg -3'
miRNA:   3'- -CCCCCAGCGUCgaugaCGCG---ACUUUg -5'
28770 3' -55.5 NC_006146.1 + 39536 0.66 0.924764
Target:  5'- uGGGGGagGCGGCgcaaGgGCUGGAu- -3'
miRNA:   3'- -CCCCCagCGUCGaugaCgCGACUUug -5'
28770 3' -55.5 NC_006146.1 + 39747 0.66 0.930073
Target:  5'- uGGuGGGUUuCGGCUGgaG-GCUGggGCu -3'
miRNA:   3'- -CC-CCCAGcGUCGAUgaCgCGACuuUG- -5'
28770 3' -55.5 NC_006146.1 + 43384 0.67 0.880959
Target:  5'- cGGGGG-CaGCAGCgGCUGCcucugccccgGCUGcGACc -3'
miRNA:   3'- -CCCCCaG-CGUCGaUGACG----------CGACuUUG- -5'
28770 3' -55.5 NC_006146.1 + 56854 0.7 0.772599
Target:  5'- cGGGGG-CgGCAGCU-UUG-GCUGggGCu -3'
miRNA:   3'- -CCCCCaG-CGUCGAuGACgCGACuuUG- -5'
28770 3' -55.5 NC_006146.1 + 60278 0.69 0.807301
Target:  5'- cGGGGagcgggaguuugCGgAGCUGCUGaGCUGGGACc -3'
miRNA:   3'- cCCCCa-----------GCgUCGAUGACgCGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 60714 0.69 0.800171
Target:  5'- uGGGGcCGCAuCUccaACcgGCGCUGAGGCc -3'
miRNA:   3'- cCCCCaGCGUcGA---UGa-CGCGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 61398 0.73 0.571663
Target:  5'- uGGGGGUUGUcccaGGCUgGCUGCGgUGGccAACg -3'
miRNA:   3'- -CCCCCAGCG----UCGA-UGACGCgACU--UUG- -5'
28770 3' -55.5 NC_006146.1 + 66718 0.69 0.809068
Target:  5'- uGGGGG-CGCAGaCggccCUGCGaCUGGAucuGCa -3'
miRNA:   3'- -CCCCCaGCGUC-Gau--GACGC-GACUU---UG- -5'
28770 3' -55.5 NC_006146.1 + 76925 0.68 0.858783
Target:  5'- cGGGGcUGCAGCcgggugaACUGCcGCUGGAGg -3'
miRNA:   3'- cCCCCaGCGUCGa------UGACG-CGACUUUg -5'
28770 3' -55.5 NC_006146.1 + 77888 0.7 0.772599
Target:  5'- aGGGGUCggaGCAcGCUGCUuaacagGCGCaGggGCg -3'
miRNA:   3'- cCCCCAG---CGU-CGAUGA------CGCGaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 77942 0.74 0.521685
Target:  5'- cGGGGGUCGCuGUUugguCUGgGCcGGAGCc -3'
miRNA:   3'- -CCCCCAGCGuCGAu---GACgCGaCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.