Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 161748 | 0.69 | 0.794759 |
Target: 5'- cGGGGGUgGCGGCUgagguccgagggggcGcCUGgGCgGggGCc -3' miRNA: 3'- -CCCCCAgCGUCGA---------------U-GACgCGaCuuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 159368 | 0.66 | 0.919215 |
Target: 5'- cGGGGG-CGUAGCUgaccgccaGCUcgcaggccGCGCUGuccACg -3' miRNA: 3'- -CCCCCaGCGUCGA--------UGA--------CGCGACuu-UG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 156729 | 0.66 | 0.919215 |
Target: 5'- cGGGGGUC-CAGCcug-GCGCaGAcGCu -3' miRNA: 3'- -CCCCCAGcGUCGaugaCGCGaCUuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 156694 | 0.67 | 0.873783 |
Target: 5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3' miRNA: 3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 154680 | 0.7 | 0.772599 |
Target: 5'- cGGGGGgCGCuGCUGCUGgGUggucuGCg -3' miRNA: 3'- -CCCCCaGCGuCGAUGACgCGacuu-UG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 154201 | 0.67 | 0.9074 |
Target: 5'- cGGGGcGUCGUGGac-CUGCGuCUGGcuGGCg -3' miRNA: 3'- -CCCC-CAGCGUCgauGACGC-GACU--UUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 153617 | 0.67 | 0.873783 |
Target: 5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3' miRNA: 3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 150539 | 0.67 | 0.873783 |
Target: 5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3' miRNA: 3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 147461 | 0.67 | 0.873783 |
Target: 5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3' miRNA: 3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 146026 | 0.66 | 0.913427 |
Target: 5'- aGGGGG--GCAGCUccuggcACUGCGCguccAGCu -3' miRNA: 3'- -CCCCCagCGUCGA------UGACGCGacu-UUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 144383 | 0.67 | 0.873783 |
Target: 5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3' miRNA: 3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 141305 | 0.67 | 0.873783 |
Target: 5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3' miRNA: 3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 137909 | 0.67 | 0.901137 |
Target: 5'- cGGGGGUaGCGGCg---GCaCUGAAAUu -3' miRNA: 3'- -CCCCCAgCGUCGaugaCGcGACUUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 132792 | 0.67 | 0.894641 |
Target: 5'- -aGGcUCGCAGCUGCUcaGCaGCUGcAGGCg -3' miRNA: 3'- ccCCcAGCGUCGAUGA--CG-CGAC-UUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 129000 | 1.12 | 0.002049 |
Target: 5'- gGGGGGUCGCAGCUACUGCGCUGAAACa -3' miRNA: 3'- -CCCCCAGCGUCGAUGACGCGACUUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 127502 | 0.77 | 0.392916 |
Target: 5'- cGGGGGUCGCAGCcg--GgGCaGAGGCa -3' miRNA: 3'- -CCCCCAGCGUCGaugaCgCGaCUUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 123001 | 0.68 | 0.842961 |
Target: 5'- cGGGGGacuucuucUCGgAGCUGCUGaccgagGCcGAGGCg -3' miRNA: 3'- -CCCCC--------AGCgUCGAUGACg-----CGaCUUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 122163 | 0.68 | 0.850972 |
Target: 5'- -cGGG-CGCaaggagaaggAGCUGCUGCGCgagcggGAGGCc -3' miRNA: 3'- ccCCCaGCG----------UCGAUGACGCGa-----CUUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 117998 | 0.67 | 0.887913 |
Target: 5'- cGGGGGgccaCGCAGaccaUGCgGgGCUcGggGCg -3' miRNA: 3'- -CCCCCa---GCGUCg---AUGaCgCGA-CuuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 115664 | 0.76 | 0.445673 |
Target: 5'- cGGGGGUCauGguGgaGCUGUaGCUGAGACc -3' miRNA: 3'- -CCCCCAG--CguCgaUGACG-CGACUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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