miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28770 3' -55.5 NC_006146.1 + 153617 0.67 0.873783
Target:  5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3'
miRNA:   3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 150539 0.67 0.873783
Target:  5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3'
miRNA:   3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 144383 0.67 0.873783
Target:  5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3'
miRNA:   3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 141305 0.67 0.873783
Target:  5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3'
miRNA:   3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 76925 0.68 0.858783
Target:  5'- cGGGGcUGCAGCcgggugaACUGCcGCUGGAGg -3'
miRNA:   3'- cCCCCaGCGUCGa------UGACG-CGACUUUg -5'
28770 3' -55.5 NC_006146.1 + 122163 0.68 0.850972
Target:  5'- -cGGG-CGCaaggagaaggAGCUGCUGCGCgagcggGAGGCc -3'
miRNA:   3'- ccCCCaGCG----------UCGAUGACGCGa-----CUUUG- -5'
28770 3' -55.5 NC_006146.1 + 83778 0.68 0.850972
Target:  5'- uGGGaGGUCGCAGUcgACcccgaugGUGUUGAGAa -3'
miRNA:   3'- -CCC-CCAGCGUCGa-UGa------CGCGACUUUg -5'
28770 3' -55.5 NC_006146.1 + 123001 0.68 0.842961
Target:  5'- cGGGGGacuucuucUCGgAGCUGCUGaccgagGCcGAGGCg -3'
miRNA:   3'- -CCCCC--------AGCgUCGAUGACg-----CGaCUUUG- -5'
28770 3' -55.5 NC_006146.1 + 88241 0.68 0.842961
Target:  5'- cGGGGGUCGguGgUAC-GgGCUGu--- -3'
miRNA:   3'- -CCCCCAGCguCgAUGaCgCGACuuug -5'
28770 3' -55.5 NC_006146.1 + 99598 0.68 0.834757
Target:  5'- uGGGGcCGCGGUgcuCUGCGUagcacGAGGCg -3'
miRNA:   3'- cCCCCaGCGUCGau-GACGCGa----CUUUG- -5'
28770 3' -55.5 NC_006146.1 + 34019 0.69 0.817803
Target:  5'- gGGGGGUCGgGGCagGCggGCGUggucccGggGCc -3'
miRNA:   3'- -CCCCCAGCgUCGa-UGa-CGCGa-----CuuUG- -5'
28770 3' -55.5 NC_006146.1 + 66718 0.69 0.809068
Target:  5'- uGGGGG-CGCAGaCggccCUGCGaCUGGAucuGCa -3'
miRNA:   3'- -CCCCCaGCGUC-Gau--GACGC-GACUU---UG- -5'
28770 3' -55.5 NC_006146.1 + 60278 0.69 0.807301
Target:  5'- cGGGGagcgggaguuugCGgAGCUGCUGaGCUGGGACc -3'
miRNA:   3'- cCCCCa-----------GCgUCGAUGACgCGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 60714 0.69 0.800171
Target:  5'- uGGGGcCGCAuCUccaACcgGCGCUGAGGCc -3'
miRNA:   3'- cCCCCaGCGUcGA---UGa-CGCGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 161748 0.69 0.794759
Target:  5'- cGGGGGUgGCGGCUgagguccgagggggcGcCUGgGCgGggGCc -3'
miRNA:   3'- -CCCCCAgCGUCGA---------------U-GACgCGaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 56854 0.7 0.772599
Target:  5'- cGGGGG-CgGCAGCU-UUG-GCUGggGCu -3'
miRNA:   3'- -CCCCCaG-CGUCGAuGACgCGACuuUG- -5'
28770 3' -55.5 NC_006146.1 + 154680 0.7 0.772599
Target:  5'- cGGGGGgCGCuGCUGCUGgGUggucuGCg -3'
miRNA:   3'- -CCCCCaGCGuCGAUGACgCGacuu-UG- -5'
28770 3' -55.5 NC_006146.1 + 77888 0.7 0.772599
Target:  5'- aGGGGUCggaGCAcGCUGCUuaacagGCGCaGggGCg -3'
miRNA:   3'- cCCCCAG---CGU-CGAUGA------CGCGaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 94999 0.71 0.704288
Target:  5'- uGGGGG--GCAGCUGaggagGUGCUGGAAUu -3'
miRNA:   3'- -CCCCCagCGUCGAUga---CGCGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 33281 0.71 0.702277
Target:  5'- gGGGGGUgGCccGGCUgggcaccGCUGCGCcgccgcucgguccUGggGCu -3'
miRNA:   3'- -CCCCCAgCG--UCGA-------UGACGCG-------------ACuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.