miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28770 3' -55.5 NC_006146.1 + 114220 0.72 0.663701
Target:  5'- aGGGGGUaGCAGCccgGCgauccgGCGUUGcAGACg -3'
miRNA:   3'- -CCCCCAgCGUCGa--UGa-----CGCGAC-UUUG- -5'
28770 3' -55.5 NC_006146.1 + 115511 0.73 0.591997
Target:  5'- uGGGGUCccggaGCAGCgugccAUUGCGCUGAGc- -3'
miRNA:   3'- cCCCCAG-----CGUCGa----UGACGCGACUUug -5'
28770 3' -55.5 NC_006146.1 + 61398 0.73 0.571663
Target:  5'- uGGGGGUUGUcccaGGCUgGCUGCGgUGGccAACg -3'
miRNA:   3'- -CCCCCAGCG----UCGA-UGACGCgACU--UUG- -5'
28770 3' -55.5 NC_006146.1 + 77942 0.74 0.521685
Target:  5'- cGGGGGUCGCuGUUugguCUGgGCcGGAGCc -3'
miRNA:   3'- -CCCCCAGCGuCGAu---GACgCGaCUUUG- -5'
28770 3' -55.5 NC_006146.1 + 115664 0.76 0.445673
Target:  5'- cGGGGGUCauGguGgaGCUGUaGCUGAGACc -3'
miRNA:   3'- -CCCCCAG--CguCgaUGACG-CGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 127502 0.77 0.392916
Target:  5'- cGGGGGUCGCAGCcg--GgGCaGAGGCa -3'
miRNA:   3'- -CCCCCAGCGUCGaugaCgCGaCUUUG- -5'
28770 3' -55.5 NC_006146.1 + 129000 1.12 0.002049
Target:  5'- gGGGGGUCGCAGCUACUGCGCUGAAACa -3'
miRNA:   3'- -CCCCCAGCGUCGAUGACGCGACUUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.