miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28770 5' -55.9 NC_006146.1 + 129037 1.08 0.003322
Target:  5'- gAAACCUCUUCACGAGGCCCCGGUAGCc -3'
miRNA:   3'- -UUUGGAGAAGUGCUCCGGGGCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 167599 0.77 0.343203
Target:  5'- cGGGCCUCccCugGGGGCCUCGGgGGCg -3'
miRNA:   3'- -UUUGGAGaaGugCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 170394 0.77 0.343203
Target:  5'- cGGGCCUCccCugGGGGCCUCGGgGGCg -3'
miRNA:   3'- -UUUGGAGaaGugCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 169463 0.77 0.343203
Target:  5'- cGGGCCUCccCugGGGGCCUCGGgGGCg -3'
miRNA:   3'- -UUUGGAGaaGugCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 168531 0.77 0.343203
Target:  5'- cGGGCCUCccCugGGGGCCUCGGgGGCg -3'
miRNA:   3'- -UUUGGAGaaGugCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 48789 0.76 0.383129
Target:  5'- -cACCagCUUCACGaAGGCCCCGGUcuccGCc -3'
miRNA:   3'- uuUGGa-GAAGUGC-UCCGGGGCCAu---CG- -5'
28770 5' -55.9 NC_006146.1 + 20178 0.76 0.426022
Target:  5'- -cGCCUCUUUGCaGAGGgcCCCCGGgGGCg -3'
miRNA:   3'- uuUGGAGAAGUG-CUCC--GGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 54242 0.75 0.443962
Target:  5'- aGAGCCUCUggGC--GGCCCCGGUcaGGCg -3'
miRNA:   3'- -UUUGGAGAagUGcuCCGGGGCCA--UCG- -5'
28770 5' -55.9 NC_006146.1 + 45415 0.74 0.529444
Target:  5'- uGGGCCag--CGCGAGGCCCCGGccgGGUu -3'
miRNA:   3'- -UUUGGagaaGUGCUCCGGGGCCa--UCG- -5'
28770 5' -55.9 NC_006146.1 + 65193 0.73 0.569385
Target:  5'- gGAGCC-CUaggcgcUCugGGGGCCCUGGgAGCc -3'
miRNA:   3'- -UUUGGaGA------AGugCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 156643 0.72 0.640706
Target:  5'- uGGGCCUCUUCcuCGAGGaCCCCuGGacgugugGGCg -3'
miRNA:   3'- -UUUGGAGAAGu-GCUCC-GGGG-CCa------UCG- -5'
28770 5' -55.9 NC_006146.1 + 144331 0.72 0.640706
Target:  5'- uGGGCCUCUUCcuCGAGGaCCCCuGGacgugugGGCg -3'
miRNA:   3'- -UUUGGAGAAGu-GCUCC-GGGG-CCa------UCG- -5'
28770 5' -55.9 NC_006146.1 + 150487 0.72 0.640706
Target:  5'- uGGGCCUCUUCcuCGAGGaCCCCuGGacgugugGGCg -3'
miRNA:   3'- -UUUGGAGAAGu-GCUCC-GGGG-CCa------UCG- -5'
28770 5' -55.9 NC_006146.1 + 153565 0.72 0.640706
Target:  5'- uGGGCCUCUUCcuCGAGGaCCCCuGGacgugugGGCg -3'
miRNA:   3'- -UUUGGAGAAGu-GCUCC-GGGG-CCa------UCG- -5'
28770 5' -55.9 NC_006146.1 + 141253 0.72 0.640706
Target:  5'- uGGGCCUCUUCcuCGAGGaCCCCuGGacgugugGGCg -3'
miRNA:   3'- -UUUGGAGAAGu-GCUCC-GGGG-CCa------UCG- -5'
28770 5' -55.9 NC_006146.1 + 147409 0.72 0.640706
Target:  5'- uGGGCCUCUUCcuCGAGGaCCCCuGGacgugugGGCg -3'
miRNA:   3'- -UUUGGAGAAGu-GCUCC-GGGG-CCa------UCG- -5'
28770 5' -55.9 NC_006146.1 + 156911 0.71 0.65093
Target:  5'- cAGCC-CggC-CGAGGCCUgGGUGGCg -3'
miRNA:   3'- uUUGGaGaaGuGCUCCGGGgCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 19074 0.71 0.65093
Target:  5'- uGAGCCUggugCcUCugGAGGCCCuggccccgccCGGUGGCc -3'
miRNA:   3'- -UUUGGA----GaAGugCUCCGGG----------GCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 12919 0.71 0.65093
Target:  5'- uGAGCCUggugCcUCugGAGGCCCuggccccgccCGGUGGCc -3'
miRNA:   3'- -UUUGGA----GaAGugCUCCGGG----------GCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 15996 0.71 0.65093
Target:  5'- uGAGCCUggugCcUCugGAGGCCCuggccccgccCGGUGGCc -3'
miRNA:   3'- -UUUGGA----GaAGugCUCCGGG----------GCCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.