miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28770 5' -55.9 NC_006146.1 + 545 0.67 0.864026
Target:  5'- cGGCCUCUcCGCG-GGCCUCcacacGUGGCc -3'
miRNA:   3'- uUUGGAGAaGUGCuCCGGGGc----CAUCG- -5'
28770 5' -55.9 NC_006146.1 + 1328 0.66 0.928284
Target:  5'- -cACC-CgacgCGCGcucGGGCCCCGGggaAGCc -3'
miRNA:   3'- uuUGGaGaa--GUGC---UCCGGGGCCa--UCG- -5'
28770 5' -55.9 NC_006146.1 + 1476 0.67 0.864026
Target:  5'- cGGCCUCUcCGCG-GGCCUCcacacGUGGCc -3'
miRNA:   3'- uUUGGAGAaGUGCuCCGGGGc----CAUCG- -5'
28770 5' -55.9 NC_006146.1 + 2260 0.66 0.928284
Target:  5'- -cACC-CgacgCGCGcucGGGCCCCGGggaAGCc -3'
miRNA:   3'- uuUGGaGaa--GUGC---UCCGGGGCCa--UCG- -5'
28770 5' -55.9 NC_006146.1 + 2408 0.67 0.864026
Target:  5'- cGGCCUCUcCGCG-GGCCUCcacacGUGGCc -3'
miRNA:   3'- uUUGGAGAaGUGCuCCGGGGc----CAUCG- -5'
28770 5' -55.9 NC_006146.1 + 3192 0.66 0.928284
Target:  5'- -cACC-CgacgCGCGcucGGGCCCCGGggaAGCc -3'
miRNA:   3'- uuUGGaGaa--GUGC---UCCGGGGCCa--UCG- -5'
28770 5' -55.9 NC_006146.1 + 3340 0.67 0.864026
Target:  5'- cGGCCUCUcCGCG-GGCCUCcacacGUGGCc -3'
miRNA:   3'- uUUGGAGAaGUGCuCCGGGGc----CAUCG- -5'
28770 5' -55.9 NC_006146.1 + 4202 0.67 0.891811
Target:  5'- gGAACCggCUUCAUGAcggugguggucacGGCCUCGGcacGCg -3'
miRNA:   3'- -UUUGGa-GAAGUGCU-------------CCGGGGCCau-CG- -5'
28770 5' -55.9 NC_006146.1 + 10500 0.66 0.922909
Target:  5'- --cCCUCUaUCGC-AGGCUCUGGUuuGCg -3'
miRNA:   3'- uuuGGAGA-AGUGcUCCGGGGCCAu-CG- -5'
28770 5' -55.9 NC_006146.1 + 11178 0.7 0.721594
Target:  5'- -cGCCUCU--ACGGGGggaaCCUGGUGGCc -3'
miRNA:   3'- uuUGGAGAagUGCUCCg---GGGCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 12919 0.71 0.65093
Target:  5'- uGAGCCUggugCcUCugGAGGCCCuggccccgccCGGUGGCc -3'
miRNA:   3'- -UUUGGA----GaAGugCUCCGGG----------GCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 13935 0.7 0.731454
Target:  5'- --uCCUCUcucccUCccCGAGGCCCCGGcuccugAGCu -3'
miRNA:   3'- uuuGGAGA-----AGu-GCUCCGGGGCCa-----UCG- -5'
28770 5' -55.9 NC_006146.1 + 15996 0.71 0.65093
Target:  5'- uGAGCCUggugCcUCugGAGGCCCuggccccgccCGGUGGCc -3'
miRNA:   3'- -UUUGGA----GaAGugCUCCGGG----------GCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 17012 0.7 0.731454
Target:  5'- --uCCUCUcucccUCccCGAGGCCCCGGcuccugAGCu -3'
miRNA:   3'- uuuGGAGA-----AGu-GCUCCGGGGCCa-----UCG- -5'
28770 5' -55.9 NC_006146.1 + 19074 0.71 0.65093
Target:  5'- uGAGCCUggugCcUCugGAGGCCCuggccccgccCGGUGGCc -3'
miRNA:   3'- -UUUGGA----GaAGugCUCCGGG----------GCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 20090 0.7 0.731454
Target:  5'- --uCCUCUcucccUCccCGAGGCCCCGGcuccugAGCu -3'
miRNA:   3'- uuuGGAGA-----AGu-GCUCCGGGGCCa-----UCG- -5'
28770 5' -55.9 NC_006146.1 + 20178 0.76 0.426022
Target:  5'- -cGCCUCUUUGCaGAGGgcCCCCGGgGGCg -3'
miRNA:   3'- uuUGGAGAAGUG-CUCC--GGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 21057 0.71 0.681476
Target:  5'- -cGCUgcgCUUCGcCGAGGCCCUGGccGCc -3'
miRNA:   3'- uuUGGa--GAAGU-GCUCCGGGGCCauCG- -5'
28770 5' -55.9 NC_006146.1 + 22152 0.71 0.65093
Target:  5'- uGAGCCUggugCcUCugGAGGCCCuggccccgccCGGUGGCc -3'
miRNA:   3'- -UUUGGA----GaAGugCUCCGGG----------GCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 23168 0.7 0.731454
Target:  5'- --uCCUCUcucccUCccCGAGGCCCCGGcuccugAGCu -3'
miRNA:   3'- uuuGGAGA-----AGu-GCUCCGGGGCCa-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.