miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28770 5' -55.9 NC_006146.1 + 23457 0.69 0.779283
Target:  5'- --gUCUCggccUACGAGGCCCUGGccgUGGCc -3'
miRNA:   3'- uuuGGAGaa--GUGCUCCGGGGCC---AUCG- -5'
28770 5' -55.9 NC_006146.1 + 25230 0.71 0.65093
Target:  5'- uGAGCCUggugCcUCugGAGGCCCuggccccgccCGGUGGCc -3'
miRNA:   3'- -UUUGGA----GaAGugCUCCGGG----------GCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 26246 0.7 0.731454
Target:  5'- --uCCUCUcucccUCccCGAGGCCCCGGcuccugAGCu -3'
miRNA:   3'- uuuGGAGA-----AGu-GCUCCGGGGCCa-----UCG- -5'
28770 5' -55.9 NC_006146.1 + 27319 0.66 0.899033
Target:  5'- -uGCCUgCUUCAacuGGCCCUccaaaaacagcgGGUGGCg -3'
miRNA:   3'- uuUGGA-GAAGUgcuCCGGGG------------CCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 28079 0.68 0.832242
Target:  5'- uGGGCUUCggggcaUUCuuGAGGCCCgGGUGGg -3'
miRNA:   3'- -UUUGGAG------AAGugCUCCGGGgCCAUCg -5'
28770 5' -55.9 NC_006146.1 + 28308 0.71 0.65093
Target:  5'- uGAGCCUggugCcUCugGAGGCCCuggccccgccCGGUGGCc -3'
miRNA:   3'- -UUUGGA----GaAGugCUCCGGG----------GCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 29324 0.7 0.731454
Target:  5'- --uCCUCUcucccUCccCGAGGCCCCGGcuccugAGCu -3'
miRNA:   3'- uuuGGAGA-----AGu-GCUCCGGGGCCa-----UCG- -5'
28770 5' -55.9 NC_006146.1 + 30486 0.67 0.878692
Target:  5'- gGAACCUCUUCcugccaACG-GGCCCCaacacagAGCu -3'
miRNA:   3'- -UUUGGAGAAG------UGCuCCGGGGcca----UCG- -5'
28770 5' -55.9 NC_006146.1 + 42640 0.69 0.779283
Target:  5'- -cGCCgugggCcUCACGuaguGGGCCCagaGGUAGCg -3'
miRNA:   3'- uuUGGa----GaAGUGC----UCCGGGg--CCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 43474 0.66 0.922909
Target:  5'- cAGCCUCcUCgGCGGccguugacaccGGCUCCGGcGGCg -3'
miRNA:   3'- uUUGGAGaAG-UGCU-----------CCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 44493 0.67 0.856378
Target:  5'- -cAUCUCgUUCGCggagagggcgcaGAGGCCCCuGGUGGg -3'
miRNA:   3'- uuUGGAG-AAGUG------------CUCCGGGG-CCAUCg -5'
28770 5' -55.9 NC_006146.1 + 44934 0.69 0.777425
Target:  5'- uGAACCUCUcguggccaggggCGCgggGAGGCCCCGGgGGa -3'
miRNA:   3'- -UUUGGAGAa-----------GUG---CUCCGGGGCCaUCg -5'
28770 5' -55.9 NC_006146.1 + 45415 0.74 0.529444
Target:  5'- uGGGCCag--CGCGAGGCCCCGGccgGGUu -3'
miRNA:   3'- -UUUGGagaaGUGCUCCGGGGCCa--UCG- -5'
28770 5' -55.9 NC_006146.1 + 47526 0.67 0.864026
Target:  5'- cAGCCaggUUGCGGGGcCCCCGGccAGCg -3'
miRNA:   3'- uUUGGagaAGUGCUCC-GGGGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 47746 0.68 0.848526
Target:  5'- gGGGCCUCcUCGCGc-GCCCUGGcgAGUa -3'
miRNA:   3'- -UUUGGAGaAGUGCucCGGGGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 48565 0.68 0.840479
Target:  5'- cGACCUUggaaUCAucCGGGGCCUCGGgGGUc -3'
miRNA:   3'- uUUGGAGa---AGU--GCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 48789 0.76 0.383129
Target:  5'- -cACCagCUUCACGaAGGCCCCGGUcuccGCc -3'
miRNA:   3'- uuUGGa-GAAGUGC-UCCGGGGCCAu---CG- -5'
28770 5' -55.9 NC_006146.1 + 51914 0.69 0.779283
Target:  5'- gGGGCCUCcgaggCAcCGAcgggcGGCCCCGGU-GCg -3'
miRNA:   3'- -UUUGGAGaa---GU-GCU-----CCGGGGCCAuCG- -5'
28770 5' -55.9 NC_006146.1 + 53005 0.66 0.928284
Target:  5'- --cCCUCUUCugGcccuGGGCCUcacgCGGcUGGCc -3'
miRNA:   3'- uuuGGAGAAGugC----UCCGGG----GCC-AUCG- -5'
28770 5' -55.9 NC_006146.1 + 54242 0.75 0.443962
Target:  5'- aGAGCCUCUggGC--GGCCCCGGUcaGGCg -3'
miRNA:   3'- -UUUGGAGAagUGcuCCGGGGCCA--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.