miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28770 5' -55.9 NC_006146.1 + 20090 0.7 0.731454
Target:  5'- --uCCUCUcucccUCccCGAGGCCCCGGcuccugAGCu -3'
miRNA:   3'- uuuGGAGA-----AGu-GCUCCGGGGCCa-----UCG- -5'
28770 5' -55.9 NC_006146.1 + 144761 0.71 0.691589
Target:  5'- cGugCUCUUUcCGAccgGGCCCCGGU-GCc -3'
miRNA:   3'- uUugGAGAAGuGCU---CCGGGGCCAuCG- -5'
28770 5' -55.9 NC_006146.1 + 19074 0.71 0.65093
Target:  5'- uGAGCCUggugCcUCugGAGGCCCuggccccgccCGGUGGCc -3'
miRNA:   3'- -UUUGGA----GaAGugCUCCGGG----------GCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 170394 0.77 0.343203
Target:  5'- cGGGCCUCccCugGGGGCCUCGGgGGCg -3'
miRNA:   3'- -UUUGGAGaaGugCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 121337 0.68 0.840479
Target:  5'- uGGCCUCagCGCuGGGCCUCaGUGGUg -3'
miRNA:   3'- uUUGGAGaaGUGcUCCGGGGcCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 123543 0.7 0.741229
Target:  5'- -uGCC-CUUgACGGuGGCCCC-GUAGCa -3'
miRNA:   3'- uuUGGaGAAgUGCU-CCGGGGcCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 170216 0.71 0.661138
Target:  5'- gGGGCCag--CGCGGGGUCCCGG-GGCg -3'
miRNA:   3'- -UUUGGagaaGUGCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 169463 0.77 0.343203
Target:  5'- cGGGCCUCccCugGGGGCCUCGGgGGCg -3'
miRNA:   3'- -UUUGGAGaaGugCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 116727 0.7 0.735375
Target:  5'- uAGACCUCauucccaaugaauaUCugGGGGgCCCGGUcGCg -3'
miRNA:   3'- -UUUGGAGa-------------AGugCUCCgGGGCCAuCG- -5'
28770 5' -55.9 NC_006146.1 + 168531 0.77 0.343203
Target:  5'- cGGGCCUCccCugGGGGCCUCGGgGGCg -3'
miRNA:   3'- -UUUGGAGaaGugCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 57331 0.71 0.691589
Target:  5'- uGGCuCUCUggggGCGGGGCCCCGGgugucGGUg -3'
miRNA:   3'- uUUG-GAGAag--UGCUCCGGGGCCa----UCG- -5'
28770 5' -55.9 NC_006146.1 + 23168 0.7 0.731454
Target:  5'- --uCCUCUcucccUCccCGAGGCCCCGGcuccugAGCu -3'
miRNA:   3'- uuuGGAGA-----AGu-GCUCCGGGGCCa-----UCG- -5'
28770 5' -55.9 NC_006146.1 + 167421 0.71 0.661138
Target:  5'- gGGGCCag--CGCGGGGUCCCGG-GGCg -3'
miRNA:   3'- -UUUGGagaaGUGCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 22152 0.71 0.65093
Target:  5'- uGAGCCUggugCcUCugGAGGCCCuggccccgccCGGUGGCc -3'
miRNA:   3'- -UUUGGA----GaAGugCUCCGGG----------GCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 156911 0.71 0.65093
Target:  5'- cAGCC-CggC-CGAGGCCUgGGUGGCg -3'
miRNA:   3'- uUUGGaGaaGuGCUCCGGGgCCAUCG- -5'
28770 5' -55.9 NC_006146.1 + 54242 0.75 0.443962
Target:  5'- aGAGCCUCUggGC--GGCCCCGGUcaGGCg -3'
miRNA:   3'- -UUUGGAGAagUGcuCCGGGGCCA--UCG- -5'
28770 5' -55.9 NC_006146.1 + 168116 0.68 0.848526
Target:  5'- gAGGCCggcgCgcgCcCGGGGUCCCGGggGGCg -3'
miRNA:   3'- -UUUGGa---Gaa-GuGCUCCGGGGCCa-UCG- -5'
28770 5' -55.9 NC_006146.1 + 48565 0.68 0.840479
Target:  5'- cGACCUUggaaUCAucCGGGGCCUCGGgGGUc -3'
miRNA:   3'- uUUGGAGa---AGU--GCUCCGGGGCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 111006 0.69 0.779283
Target:  5'- cAACCUCUUUcuggACGGGGCCUuuagcaCGG-AGCu -3'
miRNA:   3'- uUUGGAGAAG----UGCUCCGGG------GCCaUCG- -5'
28770 5' -55.9 NC_006146.1 + 128255 0.69 0.769944
Target:  5'- -uACCUCUgggccCACuacguGAGGCCCaCGGcGGCg -3'
miRNA:   3'- uuUGGAGAa----GUG-----CUCCGGG-GCCaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.